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Publications
between years 1992 and 2017 for member 'Tomaz Vrtovec'
 
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Publication list
 
 
 
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Guoyan Zheng, Chengwen Chu, Daniel L. Belavy, Bulat Ibragimov, Robert Korez, Tomaz Vrtovec, Hugo Hutt, Richard Everson, Judith Meakin, Isabel Lopez Andrade, Ben Glocker, Hao Chen, Qi Dou, Pheng-Ann Heng, Chunliang Wang, Daniel Forsberg, Ales Neubert, Jurgen Fripp, Martin Urschler, Darko Stern, Maria Wimmer, Alexey A. Novikov, Hui Cheng, Gabriele Armbrecht, Dieter Felsenberg and Shuo Li
Evaluation and comparison of 3D intervertebral disc localization and segmentation methods for 3D T2 MR data: a grand challenge
Medical Image Analysis, 35:327-344, 2017
[doi: 10.1016/j.media.2016.08.005]
[IF: 4.188 (2016); 8/105 computer science, interdisciplinary applications; 1st quartile]

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Bulat Ibragimov, Robert Korez, Bostjan Likar, Franjo Pernus, Lei Xing and Tomaz Vrtovec
Segmentation of pathological structures by landmark-assisted deformable models
IEEE Transactions on Medical Imaging, 36(7):1457-1469, 2017
[doi: 10.1109/TMI.2017.2667578]
[IF: 3.942 (2016); 9/105 computer science, interdisciplinary applications; 1st quartile]

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Tom P.C. Schloesser, Michiel M.A. Janssen, Tom Hogervorst, Tomaz Vrtovec, John de Vos, F. Cumhur OEner and René M. Castelein
The odyssey of sagittal pelvic morphology during human evolution: a perspective on different hominoidae
The Spine Journal, 17(8):1202-1206, 2017
[doi: 10.1016/j.spinee.2017.03.016]
[IF: 2.962 (2016); 10/76 orthopedics; 1st quartile]

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Miha Vodicar, Robert Kosak, Matevz Gorensek, Robert Korez, Tomaz Vrtovec, Jadran Koder, Vane Antolic and Rok Vengust
Vertebral end plate perforation for intervertebral disc height preservation after single level lumbar discectomy: a randomized controlled trial
Clinical Spine Surgery, 30(6):E707-E712, 2017
[doi: 10.1097/BSD.0000000000000305]
[IF: 2.042 (2016); 25/76 orthopedics; 2nd quartile]

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Ching-Wei Wang, Cheng-Ta Huang, Jia-Hong Lee, Chung-Hsing Li, Sheng-Wei Chang, Ming-Jhih Siao, Tat-Ming Lai, Bulat Ibragimov, Tomaz Vrtovec, Olaf Ronneberger, Philipp Fischer, Tim F. Cootes and Claudia Lindner
A benchmark for comparison of dental radiography analysis algorithms
Medical Image Analysis, 31:63-76, 2016
[doi: 10.1016/j.media.2016.02.004]
[IF: 4.188 (2016); 8/105 computer science, interdisciplinary applications; 1st quartile]

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Jianhua Yao, Joseph E. Burns, Daniel Forsberg, Alexander Seitel, Abtin Rasoulian, Purang Abolmaesumi, Kerstin Hammernik, Martin Urschler, Bulat Ibragimov, Robert Korez, Tomaz Vrtovec, Isaac Castro-Mateos, Jose M. Pozo, Alejandro F. Frangi, Ronald M. Summers and Shuo Li
A multi-center milestone study of clinical vertebral CT segmentation
Computerized Medical Imaging and Graphics, 49:16-28, 2016
[doi: 10.1016/j.compmedimag.2015.12.006]
[IF: 1.738 (2016); 72/126 radiology, nuclear medicine & medical imaging; 3rd quartile]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Computer-assisted screw size and insertion trajectory planning for pedicle screw placement surgery
IEEE Transactions on Medical Imaging, 35(6):1420-1430, 2016
[doi: 10.1109/TMI.2016.2514530]
[IF: 3.942 (2016); 9/105 computer science, interdisciplinary applications; 1st quartile]

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Dejan Knez, Janez Mohar, Robert J. Cirman, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Dolocanje velikosti in vstavitvene trajektorije pedikularnih vijakov v racunalniskotomografskih (CT) slikah deformacij prsne hrbtenice: primerjava rocnega in racunalnisko podprtega predoperacijskega nacrtovanja
Zdravniski vestnik, 85(11-12):619-631, 2016

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Tom P.C. Schloesser, Michiel M.A. Janssen, Tomaz Vrtovec and René M. Castelein
Letter to the editor concerning ‘‘Pelvic incidence: an anatomic investigation of 880 cadaveric specimens’’ by Weinberg DS, Morris WZ, Gebhart JJ, Liu RW: Eur Spine J (2015), doi: 10.1007/s00586-015-4317-z
European Spine Journal, 25(9):3004-3005, 2016
[doi: 10.1007/s00586-015-4363-6]
[IF: 2.563 (2016); 18/76 orthopedics; 1st quartile]

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
A framework for automated spine and vertebrae interpolation-based detection and model-based segmentation
IEEE Transactions on Medical Imaging, 34(8):1649-1662, 2015
[doi: 10.1109/TMI.2015.2389334]
[IF: 3.756 (2015); 13/255 engineering, electrical & electronic; 1st quartile]

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Ching-Wei Wang, Cheng-Ta Huang, Meng-Che Hsieh, Chung-Hsing Li, Sheng-Wei Chang, Wei-Cheng Li, Rémy Vandaele, Raphaël Marée, Sébastien Jodogne, Pierre Geurts, Cheng Chen, Guoyan Zheng, Chengwen Chu, Hengameh Mirzaalian, Ghassan Hamarneh, Tomaz Vrtovec and Bulat Ibragimov
Evaluation and comparison of anatomical landmark detection methods for cephalometric X-ray images: a grand challenge
IEEE Transactions on Medical Imaging, 34(9):1890-1900, 2015
[doi: 10.1109/TMI.2015.2412951]
[IF: 3.756 (2015); 13/255 engineering, electrical & electronic; 1st quartile]

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David Martincic, Miha Brojan, Franc Kosel, Darko Stern, Tomaz Vrtovec and Rok Vengust
Minimal cement volume for vertebroplasty
International Orthopaedics, 39(4):727-733, 2015
[doi: 10.1007/s00264-014-2620-7]
[IF: 2.387 (2015); 19/74 orthopedics; 2nd quartile]

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Bulat Ibragimov, Jerry L. Prince, Emi Z. Murano, Jonghye Woo, Maureen Stone, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Segmentation of tongue muscles from super-resolution magnetic resonance images
Medical Image Analysis, 20(1):198-207, 2015
[doi: 10.1016/j.media.2014.11.006]
[IF: 4.565 (2015); 4/104 computer science, interdisciplinary applications; 1st quartile]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Variability of manual and computerized methods for measuring coronal vertebral inclination in computed tomography images
Image Analysis & Stereology, 34(3):199-208, 2015
[doi: 10.5566/ias.1334]
[IF: 0.500 (2015); 210/254 mathematics, applied; 4th quartile]

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Tom P.C. Schloesser, Michiel M.A. Janssen, Tomaz Vrtovec, Franjo Pernus, F. Cumhur OEner, Max A. Viergever, Koen L. Vincken and René M. Castelein
Evolution of the ischio-iliac lordosis during natural growth and its relation with the pelvic incidence
European Spine Journal, 23(7):1433-1441, 2014
[doi: 10.1007/s00586-014-3358-z]
[IF: 2.066 (2014); 23/72 orthopedics; 1st quartile]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Investigation of the reproducibility and reliability of sagittal vertebral inclination measurements from MR images of the spine
Computerized Medical Imaging and Graphics, 38(7):620-627, 2014
[doi: 10.1016/j.compmedimag.2014.04.005]
[IF: 1.218 (2014); 53/76 engineering, biomedical; 3rd quartile]

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Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Parametric modeling of the intervertebral disc space in 3D: application to CT images of the lumbar spine
Computerized Medical Imaging and Graphics, 38(7):596-605, 2014
[doi: 10.1016/j.compmedimag.2014.04.008]
[IF: 1.218 (2014); 53/76 engineering, biomedical; 3rd quartile]

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Shape representation for efficient landmark-based segmentation in 3D
IEEE Transactions on Medical Imaging, 33(4):861-874, 2014
[doi: 10.1109/TMI.2013.2296976]
[IF: 3.390 (2014); 18/249 engineering, electrical & electronic; 1st quartile]

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Tomaz Vrtovec, Michiel M.A. Janssen, Bostjan Likar, René M. Castelein, Max A. Viergever and Franjo Pernus
Evaluation of pelvic morphology in the sagittal plane
The Spine Journal, 13(11):1500-1509, 2013
[doi: 10.1016/j.spinee.2013.06.034]
[IF: 2.800 (2013); 11/67 orthopedics; 1st quartile]

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Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Manual and computerized measurement of coronal vertebral inclination in MRI images: a pilot study
Clinical Radiology, 68(8):807-814, 2013
[doi: 10.1016/j.crad.2013.03.008]
[IF: 1.663 (2013); 63/121 radiology, nuclear medicine & medical imaging; 3rd quartile]

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Darko Stern, Vesna Njagulj, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Quantitative vertebral morphometry based on parametric modeling of vertebral bodies in 3D
Osteoporosis International, 24(4):1357-1368, 2013
[doi: 10.1007/s00198-012-2089-4]
[IF: 4.165 (2013); 30/123 endocrinology & metabolism; 1st quartile]

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Michiel M.A. Janssen, Koen L. Vincken, Sjoerd M. van Raak, Tomaz Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels and René M. Castelein
Sagittal spinal profile and spinopelvic balance in parents of scoliotic children
The Spine Journal, 13(12):1789-1800, 2013
[doi: 10.1016/j.spinee.2013.05.030]
[IF: 2.800 (2013); 11/67 orthopedics; 1st quartile]

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
A game-theoretic framework for landmark-based image segmentation
IEEE Transactions on Medical Imaging, 31(9):1761-1776, 2012
[doi: 10.1109/TMI.2012.2202915]
[IF: 4.027 (2012); 8/242 engineering, electrical & electronic; 1st quartile]

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Tomaz Vrtovec, Michiel M.A. Janssen, Bostjan Likar, René M. Castelein, Max A. Viergever and Franjo Pernus
A review of methods for evaluating the quantitative parameters of sagittal pelvic alignment
The Spine Journal, 12(5):433-446, 2012
[doi: 10.1016/j.spinee.2012.02.013]
[IF: 3.355 (2012); 3/63 orthopedics; 1st quartile]

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Tomaz Vrtovec, Michiel M. A. Janssen, Franjo Pernus, René M. Castelein and Max A. Viergever
Analysis of pelvic incidence from three-dimensional images of a normal population
Spine, 37(8):E479-E485, 2012
[doi: 10.1097/BRS.0b013e31823770af]
[IF: 2.159 (2012); 17/63 orthopedics; 2nd quartile]

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Tomaz Vrtovec, Michiel M.A. Janssen, Franjo Pernus, René M. Castelein and Max A. Viergever
Pelvic incidence: analysis in three dimensions
Journal of Bone and Joint Surgery, British Volume, 94-B(suppl. XLIV):107, 2012
[IF: 2.689 (2012); 31/198 surgery; 1st quartile]

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Peter Usenik, Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Automated tracking and analysis of phospholipid vesicle contours in phase contrast microscopy images
Medical & Biological Engineering & Computing, 49(8):957-966, 2011
[doi: 10.1007/s11517-011-0789-0]
[IF: 1.878 (2011); 25/99 computer science, interdisciplinary applications; 2nd quartile]

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Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Manual and computerized measurement of sagittal vertebral inclination in computed tomography images
Spine, 36(13):E875-E881, 2011
[doi: 10.1097/BRS.0b013e3181fe0aab]
[IF: 2.078 (2011); 20/63 orthopedics; 2nd quartile]

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Darko Stern, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Parametric modelling and segmentation of vertebral bodies in 3D CT and MR spine images
Physics in Medicine and Biology, 56(23):7505-7522, 2011
[doi: 10.1088/0031-9155/56/23/011]
[IF: 2.829 (2011); 14/72 engineering, biomedical; 1st quartile]

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Tomaz Vrtovec, Rok Vengust, Bostjan Likar and Franjo Pernus
Analysis of four manual and a computerized method for measuring axial vertebral rotation in computed tomography images
Spine, 35(12):E535-E541, 2010
[doi: 10.1097/BRS.0b013e3181cb8d2b]
[IF: 2.510 (2010); 10/61 orthopedics; 1st quartile]

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Darko Stern, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automated detection of spinal centrelines, vertebral bodies and intervertebral discs in CT and MR images of lumbar spine
Physics in Medicine and Biology, 55(1):247-264, 2010
[doi: 10.1088/0031-9155/55/1/015]
[IF:  3.056 (2010); 11/69 engineering, biomedical; 1st quartile]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Determination of axial vertebral rotation in MR images: comparison of four manual and a computerized method
European Spine Journal, 19(5):774-781, 2010
[doi: 10.1007/s00586-010-1340-y]
[IF: 1.994 (2010); 20/61 orthopedics; 2nd quartile]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
A review of methods for quantitative evaluation of axial vertebral rotation
European Spine Journal, 18(8):1079-1090, 2009
[doi: 10.1007/s00586-009-0914-z]
[IF: 1.956 (2009); 14/56 orthopedics; 1st quartile]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
A review of methods for quantitative evaluation of spinal curvature
European Spine Journal, 18(5):593-607, 2009
[doi: 10.1007/s00586-009-0913-0]
[IF: 1.956 (2009); 14/56 orthopedics; 1st quartile]

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Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Quantitative analysis of spinal curvature in 3D: application to CT images of normal spine
Physics in Medicine and Biology, 53(7):1895-1908, 2008
[doi: 10.1088/0031-9155/53/7/006]
[IF: 2.784 (2008); 10/51 engineering, biomedical; 1st quartile]

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Tomaz Vrtovec, Sébastien Ourselin, Lavier Gomes, Bostjan Likar and Franjo Pernus
Automated generation of curved planar reformations from MR images of the spine
Physics in Medicine and Biology, 52(10):2865-2878, 2007
[doi: 10.1088/0031-9155/52/10/015]
[IF: 2.528 (2007); 9/44 engineering, biomedical; 1st quartile]

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Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Automated curved planar reformation of 3D spine images
Physics in Medicine and Biology, 50(19):4527-4540, 2005
[doi: 10.1088/0031-9155/50/19/007]
[IF: 2.683 (2005); 6/41 engineering, biomedical; 1st quartile]

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Tomaz Vrtovec
Curved planar reformation of CT spine images
Elektrotehniski vestnik - Electrotechnical Review, 72:285-290, 2005

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Tomaz Vrtovec, Dejan Tomazevic, Bostjan Likar, Ludvik Travnik and Franjo Pernus
Automated construction of 3D statistical shape models
Image Analysis & Stereology, 23(2):111-120, 2004
[doi: 10.5566/ias.v23.p111-120]

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Uros Petkovic, Robert Korez, Stefan Parent, Samuel Kadoury and Tomaz Vrtovec
3D Cobb angle measurements from scoliotic mesh models with varying face-vertex density
Proceedings of the 5th MICCAI Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI2016, B. Glocker et al. (Eds.), Sep 10, Québec City, Canada, 46-55, 2017

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Intervertebral disc segmentation in MR images with 3D convolutional networks
SPIE Medical Imaging 2017, Image Processing, 11 - 16 Feb, Orlando FL, USA, M.A. Styner, E.D. Angelini (Eds.), 10133:1013306, 2017
[doi: 10.1117/12.2254069]

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Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Segmentation of pathological spines in CT images using a two-way CNN and a collision-based model
Proceedings of the 5th MICCAI Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI2016, B. Glocker et al. (Eds.), Sep 10, Québec City, Canada, 91-103, 2017

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Uros Petkovic, Robert Korez and Tomaz Vrtovec
Semi-automated measurement of the Cobb angle from 3D mesh models of the scoliotic spine
10th International Symposium on Image and Signal Processing and Analysis - ISPA 2017, Sep 18-20, Ljubljana, Slovenia, 2017

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Accurate landmark-based segmentation by incorporating landmark misdetections
2016 IEEE Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2016, 12-16 Apr, Prague, Czech Republic, J. Kybic, M. Sonka (Eds.), 1072-1075, 2016
[doi: 10.1109/ISBI.2016.7493451]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automated determination of pedicle morphometry in the thoracic spine
2016 IEEE Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2016, 12-16 Apr, Prague, Czech Republic, J. Kybic, M. Sonka (Eds.), 664-667, 2016
[doi: 10.1109/ISBI.2016.7493354]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automated pedicle screw size and trajectory planning by maximization of fastening strength
Computational Methods and Clinical Applications for Spine Imaging, Third International Workshop and Challenge, CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Lecture Notes in Computer Science 9402:3-13, 2016
[doi: 10.1007/978-3-319-41827-8_1]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Avtomatska metoda nacrtovanja velikosti in trajektorije pedikularnih vijakov
Racunalniska obdelava slik in njena uporaba v Sloveniji - 11. strokovna konferenca - ROSUS 2016, 17. marec, Maribor, Slovenija, B. Potocnik (ur.), 55-68, 2016

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor
Computational Methods and Clinical Applications for Spine Imaging, Third International Workshop and Challenge, CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Lecture Notes in Computer Science 9402:117-124, 2016
[doi: 10.1007/978-3-319-41827-8_11]

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Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Joint detection and segmentation of vertebral bodies in CT images by sparse representation error minimization
SPIE Medical Imaging 2016, Image Processing, 27 Feb - 3 Mar, San Diego CA, USA, M.A. Styner, E.D. Angelini (Eds.), 9784:97842Y, 2016
[doi: 10.1117/12.2217087]

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Dejan Knez, Janez Mohar, Robert J. Cirman, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Manual and computer-assisted pedicle screw placement plans: a quantitative comparison
Proceedings of the 4th MICCAI Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI2016, J. Yao et al. (Eds.), Oct 17, Athens, Greece, 78-88, 2016

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Dejan Knez, Janez Mohar, Robert J. Cirman, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Manual and computer-assisted pedicle screw placement plans: a quantitative comparison
Computational Methods and Clinical Applications for Spine Imaging, Fourth International Workshop and Challenge, CSI 2016, held in conjunction with the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Lecture Notes in Computer Science 10182:105-115, 2016
[doi: 10.1007/978-3-319-55050-3_10]

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Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Model-based segmentation of vertebral bodies from MR images with 3D CNNs
Proceedings of the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, S. Ourselin et al. (Eds.), 17-21 Oct, Athens, Greece, Lecture Notes in Computer Science 9901:433-441, 2016
[doi: 10.1007/978-3-319-46723-8_50]

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Dejan Knez, Janez Mohar, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Quantitative comparison between the straight-forward and anatomical insertion technique for pedicle screw placement
SPIE Medical Imaging 2016, Image Processing, 27 Feb - 3 Mar, San Diego CA, USA, M.A. Styner, E.D. Angelini (Eds.), 9784:978439, 2016
[doi: 10.1117/12.2216028]

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Robert Korez, Benjamin Aubert, Thierry Cresson, Stefan Parent, Tomaz Vrtovec, Jacques de Guise and Samuel Kadoury
Sparse and multi-object pose+shape modeling of the three-dimensional scoliotic spine
2016 IEEE Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2016, 12-16 Apr, Prague, Czech Republic, J. Kybic, M. Sonka (Eds.), 225-228, 2016
[doi: 10.1109/ISBI.2016.7493250]

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images
Proceedings of the Workshop on Computational Methods and Clinical Applications for Spine Imaging held at the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Lecture Notes in Computational Vision and Biomechanics 20:85-94, 2015
[doi: 10.1007/978-3-319-14148-0_8]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automated pedicle screw size and trajectory planning by maximization of fastening strength
Proceedings of the 3rd MICCAI Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI2015, T. Vrtovec et al. (Eds.), Oct 5, Munich, Germany, 3-13, 2015

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor
Proceedings of the 3rd MICCAI Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI2015, T. Vrtovec et al. (Eds.), Oct 5, Munich, Germany, 111-118, 2015

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Bulat Ibragimov, Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Interpolation-based detection of lumbar vertebrae in CT spine images
Proceedings of the Workshop on Computational Methods and Clinical Applications for Spine Imaging held at the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Lecture Notes in Computational Vision and Biomechanics 20:73-84, 2015
[doi: 10.1007/978-3-319-14148-0_7]

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images
Proceedings of the Workshop on Computational Methods and Clinical Applications for Spine Imaging held at the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Lecture Notes in Computational Vision and Biomechanics 20:235-240, 2015
[doi: 10.1007/978-3-319-14148-0_21]

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Optimal reinforcement of training dataset in supervised landmark-based segmentation
SPIE Medical Imaging 2015, Image Processing, 21-26 Feb, Orlando FL, USA, S. Ourselin, M.A. Styner (Eds.), 9413:94132K-1-6, 2015
[doi: 10.1117/12.2082321]

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images
Proceedings of the 2nd MICCAI Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI CSI 2014, 14 Sep, Boston, USA, J. Yao et al. (Eds.), 76-85, 2014

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Comparison of manual and computerized measurements of sagittal vertebral inclination in MR images
Proceedings of the Workshop on Computational Methods and Clinical Applications for Spine Imaging held at the 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Lecture Notes in Computational Vision and Biomechanics 17:111-121, 2014
[doi: 10.1007/978-3-319-07269-2_10]

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Robert Korez, Darko Stern, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Determination of the intervertebral disc space from CT images of the lumbar spine
SPIE Medical Imaging 2014, Image Processing, 15-20 Feb, San Diego CA, USA, S. Ourselin, M.A. Styner (Eds.), 9034:90342Q, 2014
[doi: 10.1117/12.2043734]

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Bulat Ibragimov, Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Interpolation-based detection of lumbar vertebrae in CT spine images
Proceedings of the 2nd MICCAI Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI CSI 2014, 14 Sep, Boston, USA, J. Yao et al. (Eds.), 65-75, 2014

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images
Proceedings of the 2nd MICCAI Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI CSI 2014, 14 Sep, Boston, USA, J. Yao et al. (Eds.), 208-213, 2014

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories
Proceedings of the Workshop on Computational Methods and Clinical Applications for Spine Imaging held at the 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Lecture Notes in Computational Vision and Biomechanics 17:3--14, 2014
[doi: 10.1007/978-3-319-07269-2_1]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Comparison of manual and computerized measurements of sagittal vertebral inclination in MR images
Proceedings of MICCAI 2013 Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2013, Sep 26, Nagoya, Japan, Yao et al. (Eds.), 100-110, 2013

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Darko Stern, Vesna Njagulj, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Quantitative vertebral morphometry in 3D
SPIE Medical Imaging 2013, Image Processing, 9-14 Feb, Lake Buena Vista FL, USA, S. Ourselin, D.R. Haynor (Eds.), 8669:86690F, 2013
[doi: 10.1117/12.2003646]

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories
Proceedings of MICCAI 2013 Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2013, Sep 26, Nagoya, Japan, Yao et al. (Eds.), 1-12, 2013

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Statistical shape representation with landmark clustering by solving the assignment problem
SPIE Medical Imaging 2013, Image Processing, 9-14 Feb, Lake Buena Vista FL, USA, S. Ourselin, D.R. Haynor (Eds.), 8669:86690E, 2013
[doi: 10.1117/12.2006176]

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automated measurement of anterior and posterior acetabular sector angles
SPIE Medical Imaging 2012, Computer-Aided Diagnosis, 4-9 Feb, San Diego CA, USA, B. van Ginneken, C.L. Novak (Eds.), 8315:83151U, 2012
[doi: 10.1117/12.910873]

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Darko Stern, Miran Buermen, Vesna Njagulj, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automatic measurement of vertebral body deformations in CT images based on a 3D parametric model
SPIE Medical Imaging 2012, Computer-Aided Diagnosis, 4-9 Feb, San Diego CA, USA, B. van Ginneken, C.L. Novak (Eds.), 8315:831510, 2012
[doi: 10.1117/12.911107]

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Tomaz Vrtovec, Michiel M.A. Janssen, Franjo Pernus, René M. Castelein and Max A. Viergever
Computerized analysis of pelvic incidence from 3D images
SPIE Medical Imaging 2012, Image Processing, 4-9 Feb, San Diego CA, USA, D.R. Haynor, S. Ourselin (Eds.), 8314:83142G, 2012
[doi: 10.1117/12.910912]

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Peter Usenik, Miran Buermen, Tomaz Vrtovec, Ales Fidler, Franjo Pernus and Bostjan Likar
Automated classification and visualization of healthy and pathological dental tissues based on near-infrared hyper-spectral imaging
SPIE Medical Imaging 2011, Computer-Aided Diagnosis, 12-17 Feb, Lake Buena Vista FL, USA, R.M. Summers, B. van Ginneken (Eds.), 7963:796340, 2011
[doi: 10.1117/12.878264]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Determination of vertebral pose in 3D by minimization of vertebral asymmetry
SPIE Medical Imaging 2011, Image Processing, 12-17 Feb, Lake Buena Vista FL, USA, B.M. Dawant, D.R. Haynor (Eds.), 7962:79620F, 2011
[doi: 10.1117/12.877762]

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Bulat Ibragimov, Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Segmentation of lung fields by game theory and dynamic programming
4th International Workshop on Pulmonary Image Analysis - PIA 2011, 18 Sep, Toronto, ON, Canada, 101-111, 2011

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Darko Stern, Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Segmentation of vertebral bodies in CT and MR images based on 3D deterministic models
SPIE Medical Imaging 2011, Image Processing, 12-17 Feb, Lake Buena Vista FL, USA, B.M. Dawant, D.R. Haynor (Eds.), 7962:79620D, 2011
[doi: 10.1117/12.877365]

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Darko Stern, Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Automated determination of the centers of vertebral bodies and intervertebral discs in CT and MR lumbar spine images
SPIE Medical Imaging 2010, Image Processing, 13-18 Feb, San Diego CA, USA, B.M. Dawant, D.R. Haynor (Eds.), 7623:762350, 2010
[doi: 10.1117/12.844567]

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Peter Usenik, Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Automated tracking of vesicles in phase contrast microscopy images
20th IAPR International Conference on Pattern Recognition - ICPR 2010, 23-26 Aug, Istanbul, Turkey, 2520-2523, 2010
[doi: 10.1109/ICPR.2010.617]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Evaluation of manual and computerized methods for the determination of axial vertebral rotation
SPIE Medical Imaging 2010, Image Processing, 13-18 Feb, San Diego CA, USA, B.M. Dawant, D.R. Haynor (Eds.), 7623:76234W, 2010
[doi: 10.1117/12.843528]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Evaluation of sagittal vertebral rotation in CT images by manual and automated methods
2010 IEEE Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2010, 14-17 Apr, Rotterdam, The Netherlands, 412-415, 2010
[doi: 10.1109/ISBI.2010.5490323]

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Darko Stern, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Segmentation of vertebral bodies in MR images based on geometrical models in 3D
5th International Workshop on Medical Imaging and Augmented Reality - MIAR 2010, 19-20 Sep, Beijing, China, H. Liao, P.J. Edwards, X. Pan, Y. Fan, G.-Z. Yang (Eds.), Lecture Notes in Computer Science 6326:419-428, 2010
[doi: 10.1007/978-3-642-15699-1_44 ]

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Darko Stern, Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Automated determination of spinal centerline in CT and MR images
SPIE Medical Imaging 2009, Image Processing, 7-12 Feb, Lake Buena Vista FL, USA, J.P.W. Pluim, B.M. Dawant (Eds.), 7259:72594M, 2009
[doi: 10.1117/12.811150]

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Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
A symmetry-based method for the determination of vertebral rotation in 3D
11th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, 6-10 Sep, New York, USA, D. Metaxas et al. (Eds.), Springer, Lecture Notes in Computer Science 5241:942-950, 2008
[doi: 10.1007/978-3-540-85988-8_112]

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Tomaz Vrtovec
Modality-independent determination of vertebral position and rotation in 3D
4th International Workshop on Medical Imaging and Augmented Reality - MIAR 2008, 1-2 Aug, Tokyo, Japan, T. Dohi, I. Sakuma, H. Liao (Eds.), Springer, Lecture Notes in Computer Science 5128:89-97, 2008
[doi: 10.1007/978-3-540-79982-5_10]

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Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Determination of 3D location and rotation of lumbar vertebrae in CT images by symmetry-based auto-registration
SPIE Medical Imaging 2007, Image Processing, 17-22 Feb, San Diego CA, USA, J.P.W. Pluim, J.M. Reinhardt (Eds.), 6512:65121Q, 2007
[doi: 10.1117/12.710580]

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Tomaz Vrtovec, Sébastien Ourselin, Lavier Gomes, Bostjan Likar and Franjo Pernus
Generation of curved planar reformations from magnetic resonance images of the spine
9th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2006, 1-6 Oct, Copenhagen, Denmark, R. Larsen, M. Nielsen, J. Sporring (Eds.), Springer, Lecture Notes in Computer Science 4191:135-143, 2006
[doi: 10.1007/11866763_17]

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Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Curved planar reformation of CT spine data
SPIE Medical Imaging 2005, Image Processing, 13-17 Feb, San Diego CA, USA, J.M. Fitzpatrick, J.M. Reinhardt (Eds.), 5747:1446-1456, 2005
[doi: 10.1117/12.595113]

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Tomaz Vrtovec, Bostjan Likar and Franjo Pernus
Spine-based coordinate system
27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society EMBC '05, 1-4 Sep, Shanghai, China, 2005
[doi: 10.1109/IEMBS.2005.1615629]

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Tomaz Vrtovec, Bostjan Likar, Dejan Tomazevic and Franjo Pernus
Automated robust generation of compact 3D statistical shape models
SPIE Medical Imaging 2004, Image Processing, 16-19 Feb, San Diego CA, USA, J.M. Fitzpatrick, M. Sonka (Eds.), 5370:1312-1323, 2004
[doi: 10.1117/12.533470]

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Tomaz Vrtovec, Dejan Tomazeviè, Bostjan Likar and Franjo Pernus
Statistical deformable model of a lumbar vertebra
8th Computer Vision Winter Workshop - CVWW 2003, 3-6 Feb, Valtice, Czech Republic, O. Drbohlav (Ed.), 91-96, 2003

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Rob C. Brink, Ludvig Vavruch, Tom P.C. Schloesser, Kasim Abul-Kasim, Acke Ohlin, Hans Tropp, René M. Castelein and Tomaz Vrtovec
Three-dimensional pelvic incidence is much higher in (thoraco)lumbar scoliosis than in thoracic scoliosis and controls
Meeting of the Nordic Spinal Deformities Society - NSDS 2017, Aug 24-26, Stockholm, Sweden, 2017

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Janez Mohar, Dejan Knez, Robert J. Cirman, Rihard Trebse, Rene Mihalic and Tomaz Vrtovec
Comparison of automatically and manually obtained pedicle screw plans in deformities of the thoracic spine
29th Annual Congress of the International Society for Technology in Arthoplasty - ISTA 2016, 5 - 8 Oct, Boston MA, USA, S.B. Murphy (Ed.), #4334, 2016

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Miha Vodicar, Robert Kosak, Matevz Gorensek, Robert Korez, Tomaz Vrtovec, Jadran Koder and Rok Vengust
Does vertebral end plate perforation cause annulus reparation and intervertebral space restoration? A pilot randomized controlled trial
Proceedings of the 16th Annual Congress of the European Federation of National Associations of Orthopaedics and Traumatology - EFORT 2015, 27-29 May, Prague, Czech Republic, #2757, 2015

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Miha Vodicar, Robert Kosak, Matevz Gorencek, Robert Korez, Tomaz Vrtovec, Jadran Koder and Rok Vengust
Intervertebral space restoration after lumbar discectomy: is vertebral end plate perforation the answer? (P80)
European Spine Journal, 24(Suppl 6):S743-S800, 2015
[doi: 10.1007/s00586-015-4131-7]
[IF: 2.132 (2015); 24/74 orthopedics; 2nd quartile]

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David Martincic, Miha Brojan, Franc Kosel, Darko Stern, Tomaz Vrtovec and Rok Vengust
Optimal cement volume for vertebroplasty – biomechanical study
Proceedings of the 16th Annual Congress of the European Federation of National Associations of Orthopaedics and Traumatology - EFORT 2015, 27-29 May, Prague, Czech Republic, #1780, 2015

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Tom P.C. Schloesser, Michiel M.A. Janssen, Tomaz Vrtovec, Franjo Pernus, F. Cumhur OEner, Max A. Viergever, Koen L. Vincken and René M. Castelein
EPOS 33rd Annual Meeting: The development of the ischio-iliac lordosis during growth as an essential adaptation towards human bipedalism and a determinant of sagittal balance (OP46)
Journal of Childrens Orthopaedics, 8(Suppl 1):S7-S54, 2014
[doi: 10.1007/s11832-014-0573-4]

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Tom P.C. Schloesser, Michiel M.A. Janssen, Tomaz Vrtovec, Franjo Pernus, F. Cumhur OEner, Max A. Viergever, Koen L. Vincken and René M. Castelein
Eurospine 2014: The development of the ischio-iliac lordosis during growth as an essential adaptation towards human bipedalism and a determinant of sagittal balance (OP53)
European Spine Journal, 23(Suppl 5):S469-S496, 2014
[doi: 10.1007/s00586-014-3515-4]
[IF: 2.066 (2014); 23/72 orthopedics; 1st quartile]

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Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Razgradnja medicinskih slik hrbtenice
Raèunalniska obdelava slik in njena uporaba v Sloveniji - 8. strokovna konferenca - ROSUS 2013, 21. marec, Maribor, Slovenija, B. Potoènik (ur.), 72-79, 2013

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Michiel M.A. Janssen, Koen L. Vincken, S.M. Van Raak, Tomaz Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels and René M. Castelein
EuroSpine 2012: Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls (O195)
European Spine Journal, 21(Suppl 3):S269-S337, 2012
[doi: 10.1007/s00586-012-2269-0]
[IF: 2.133 (2012); 19/65 orthopedics; 2nd quartile]

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David Martincic, Miha Brojan, Franc Kosel, Darko Stern, Tomaz Vrtovec and Rok Vengust
Optimal cement volume for vertebroplasty - biomechanical study
Annual Spine Experts Group Meeting & Slovenia 2012 Spine Symposium, 29-30 Nov, Ljubljana, Slovenia, 28, 2012

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Michiel M.A. Janssen, Koen L. Vincken, Tomaz Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels and René M. Castelein
Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls
19th International Meeting on Advanced Spine Techniques - IMAST 2012, 18-21 Jul, Istanbul, Turkey, 2012

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Michiel M.A. Janssen, Koen L. Vincken, S.M. Van Raak, Tomaz Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels and René M. Castelein
Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls
SpineWeek 2012, 28 May - 1 Jun, Amsterdam, the Netherlands, 2012

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Michiel M.A. Janssen, Tomaz Vrtovec, Franjo Pernus, F. Cumhur OEner, Evie E. Vereecke, Anthony J. Channon, Max A. Viergever, Koen L. Vincken and René M. Castelein
The pelvic lordosis: an essential adaptation in human evolution, and a determinant of spinopelvic alignment
19th International Meeting on Advanced Spine Techniques - IMAST 2012, 18-21 Jul, Istanbul, Turkey, 2012

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Tomaz Vrtovec, Michiel M.A. Janssen, Franjo Pernus, René M. Castelein and Max A. Viergever
Pelvic incidence: analysis in three dimensions
11th Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery - CAOS 2011, 15-18 Jun, London, UK, J.P. Cobb (Ed.), 2011

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Peter Usenik, Tomaz Vrtovec, Franjo Pernus and Bostjan Likar
Sledenje oblik fosfolipidnih veziklov zajetih s fazno kontrastno mikroskopijo
Raèunalniska obdelava slik in njena uporaba v Sloveniji - 5. strokovna konferenca - ROSUS 2010, 18. marec, Maribor, Slovenija, B. Potoènik (ur.), 94-100, 2010

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Tomaz Vrtovec, Rok Vengust, Bostjan Likar and Franjo Pernus
Symmetry of vertebral structures: can it be used to measure axial vertebral rotation?
Slovenia 2010 Spine Symposium, 9-10 Apr, Ljubljana, Slovenia, 73, 2010

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Bulat Ibragimov and Tomaz Vrtovec
Landmark-based statistical shape representations
Chapter 4 of the book Statistical Shape and Deformation Analysis (Academic Press, Elsevier), 89-113, 2017
[doi: 10.1016/B978-0-12-810493-4.00005-5]

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Tomaz Vrtovec
Automated determination of the spine-based coordinate system for an efficient cross-sectional visualization of 3D spine images
Chapter 8 of the book "Spinal Imaging and Image Analysis", S. Li, J. Yao (Eds.), Springer, Lecture Notes in Computational Vision and Biomechanics 18:231-299, 2015
[doi: 10.1007/978-3-319-12508-4_8]

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Tomaz Vrtovec
Teorija linearnih sistemov: izpitne naloge z resitvami
Zalozba FE in FRI, ISBN 978-961-243-188-4, 2011

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Tomaz Vrtovec and Bostjan Likar
Teorija linearnih sistemov: reseni primeri in vaje
Zalozba FE in FRI, ISBN 978-961-243-076-4, 2007

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Tomaz Vrtovec
Evaluation of spinal and pelvic parameters from three-dimensional medical images
Utrecht University, the Netherlands, 2011

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Michiel M.A. Janssen, Koen L. Vincken, S.M. Van Raak, Tomaz Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels and René M. Castelein
Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls
Studies in Health Technology and Informatics, 176:463, 2012

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Michiel M.A. Janssen, Tomaz Vrtovec, Franjo Pernus, F. Cumhur OEner, Evie E. Vereecke, Anthony J. Channon, Max A. Viergever, Koen L. Vincken and René M. Castelein
The pelvic lordosis: an essential adaptation in human evolution, and a determinant of spinopelvic alignment
Studies in Health Technology and Informatics, 176:462, 2012

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