Our Publications

Publications for 'Peter Naglič'

Papers in Conference Proceedings

Peter Naglič, Zuhail P. Kottoli, Matjaž Humar

Digital holography with embedded microlasers: a preliminary study

SPIE Photonics West 2024: Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XXII, Jan 27-Feb 1, San Francisco, CA, USA (A. Tarnok, J.P. Houston, Eds.), 12846:1284609, 2024

Papers in Conference Proceedings

Peter Naglič, Ernesto Pini, Lorenzo Pattelli, Miran Bürmen

Massively parallel Monte Carlo simulations of light propagation in anisotropic scattering media by open-source PyXOpto engine

SPIE Photonics West 2024: Biomedical Applications of Light Scattering XIV, Jan 27-Feb 1, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 12856:1285608, 2024

Papers in Conference Proceedings

Ana Marin, Peter Naglič, Miran Bürmen

Open-source protocol for preparation of turbid phantoms with microsphere suspensions

SPIE Photonics West 2024: Design and Quality for Biomedical Technologies XVII, Jan 27-Feb 1, San Francisco, CA, USA (G. Vargas, Ed.), 12833:1283305, 2024

Papers in Conference Proceedings

Ernesto Pini, Peter Naglič, Miran Bürmen, Alexander Gatto, Henrik Schäfer, Diederik Wiersma, Lorenzo Pattelli

Time-resolved light transport in structurally anisotropic media

SPIE Photonics West 2024: Biomedical Applications of Light Scattering XIV, Jan 27-Feb 1, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 12856:1285606, 2024

Abstracts in Conference Proceedings

Peter Naglič, Uroš Tkalec

Digital holographic microscopy in reflection mode for precise topography determination of liquid crystal textures on micropatterned substrates

Joint Conference of the Italian and European Community of Condensed Matter Physics - CMD30 FisMat 2023, Sep 4-8, Milan, Italy, 2023

Abstracts in Conference Proceedings

Peter Naglič, Ana Marin, Matic Ivančič, Martin Rigler, Miran Bürmen

Optical properties of particulate matter collected on glass fiber filters measured by spatially resolved reflectance spectroscopy

European Aerosol Conference - EAC2023, Sep 3-8, Malaga, Spain, 2023, 3.05#14, 2023

Papers in Journals

Miran Bürmen, Franjo Pernuš, Peter Naglič

MCDataset: a public reference dataset of Monte Carlo simulated quantities for multilayered and voxelated tissues computed by massively parallel PyXOpto Python package

Journal of Biomedical Optics, 27(8):083012, 2022

JCR Impact Factor: 3.5 (2022) -- Best Category: 38/135 radiology, nuclear medicine & medical imaging -- Quartile: 2

Papers in Journals

Peter Naglič, Franjo Pernuš, Miran Bürmen

Reflectance calibration of multimode optical fiber probes by probe-to-target distance reflectance profile modeling

Measurement, 203:112002, 2022

JCR Impact Factor: 5.6 (2022) -- Best Category: 9/63 instruments & instrumentation -- Quartile: 1

Papers in Conference Proceedings

Žan Cimperman, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Autofocus algorithms for lensless on-chip microscopy validated on synthetic targets for microfluidic applications and particle tracking

SPIE Photonics Europe 2022: Unconventional Optical Imaging III, Apr 3-7, Strasbourg, France (M. P. Georges, G. Popescu, N. Verrier, Eds.), 12136:1213617, 2022

Papers in Conference Proceedings

Miran Bürmen, Peter Naglič, Janis Spigulis

Comparison of in-vivo measured optical path length distribution of backscattered light in human skin and time-resolved Monte Carlo simulations

SPIE European Conference on Biomedical Optics 2021: Diffuse Optical Spectroscopy and Imaging VIII, Jun 20-24, Munich, Germany (D. Contini, Y. Hoshi, T. D. O'Sullivan, Eds.), 11920:119201V, 2021

Papers in Conference Proceedings

Yevhen Zelinskyi, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Efficient Monte Carlo simulations of subdiffusive reflectance for spatial frequency domain imaging systems with a low NA

SPIE European Conference on Biomedical Optics 2021: Diffuse Optical Spectroscopy and Imaging VIII, Jun 20-24, Munich, Germany (D. Contini, Y. Hoshi, T. D. O'Sullivan, Eds.), 11920:119201U, 2021

Papers in Conference Proceedings

Peter Naglič, Yevhen Zelinskyi, Franjo Pernuš, Boštjan Likar, Miran Bürmen

pyxopto: an open-source Python library with utilities for fast light propagation modeling in turbid media

SPIE European Conference on Biomedical Optics 2021: Diffuse Optical Spectroscopy and Imaging VIII, Jun 20-24, Munich, Germany (D. Contini, Y. Hoshi, T. D. O'Sullivan, Eds.), 11920:1192012, 2021

Papers in Journals

Peter Naglič, Yevhen Zelinskyi, Boštjan Likar, Miran Bürmen

Determination of refractive index, size, and solid content of monodisperse polystyrene microsphere suspensions for the characterization of optical phantoms

Biomedical Optics Express, 11(4):1901-1918, 2020

JCR Impact Factor: 3.732 (2020) -- Best Category: 23/99 optics -- Quartile: 1

Papers in Journals

Yevhen Zelinskyi, Peter Naglič, Franjo, Pernuš, Boštjan Likar, Miran Bürmen

Fast and accurate Monte Carlo simulations of subdiffusive spatially resolved reflectance for a realistic optical fiber probe tip model aided by a deep neural network

Biomedical Optics Express, 11(7):3875-3889, 2020

JCR Impact Factor: 3.732 (2020) -- Best Category: 23/99 optics -- Quartile: 1

Papers in Journals

Peter Naglič, Yevhen Zelinskyi, Luka Rogelj, Jošt Stergar, Matija Milanič, Jure Novak, Borut Kumperščak, Miran Bürmen

Optical properties of PlatSil SiliGlass tissue-mimicking phantoms

Biomedical Optics Express, 11(7):3753-3768, 2020

JCR Impact Factor: 3.732 (2020) -- Best Category: 23/99 optics -- Quartile: 1

Abstracts in Conference Proceedings

Jure Novak, Peter Naglič, Yevhen Zelinskyi, Luka Rogelj, Jošt Stergar, Borut Kumperščak, Miran Bürmen, Matija Milanič

Optical properties of silicone rubber tissue phantoms for biomedical optics applications (F06.00003)

American Physical Society (APS) March Meeting 2020, 2-6 Mar, Denver CO, USA, F06.00003, 2020

Abstracts in Conference Proceedings

Peter Naglič, Yevhen Zelinskyi, Boštjan Likar, Miran Bürmen

Simple approach to refractive index measurements of polystyrene microspheres

SPIE Photonics West 2020: BiOS - Design and Quality for Biomedical Technologies XIII, San Francisco CA, USA (J. Hwang, G. Vargas, Eds.), 11231:11231OJ, 2020

Papers in Journals

Matic Ivančič, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Efficient estimation of subdiffusive optical parameters in real time from spatially resolved reflectance by artificial neural networks

Optics Letters, 43(12):2901-2904, 2018

JCR Impact Factor: 3.866 (2018) -- Best Category: 16/95 optics -- Quartile: 1

Papers in Conference Proceedings

Peter Naglič, Matic Ivančič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Portable measurement system for real-time acquisition and analysis of in-vivo spatially resolved reflectance in the subdiffusive regime

SPIE Photonics West 2018: BiOS - Design and Quality for Biomedical Technologies XI, Jan 27 - Feb 1, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 10486:1048618, 2018

Papers in Conference Proceedings

Peter Naglič, Matic Ivančič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Regression models for real-time estimation of optical and structural sample properties from subdiffusive spatially resolved reflectance

SPIE Photonics West 2018: BiOS - Optical Interactions with Tissue and Cells XXIX, Jan 27 - Feb 1, San Francisco, CA, USA (E. D. Jansen, H. T. Beier, Eds.), 10492:104920Q, 2018

Papers in Journals

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Adopting higher-order similarity relations for improved estimation of optical properties from subdiffusive reflectance

Optics Letters, 42(7):1357-1360, 2017

JCR Impact Factor: 3.589 (2017) -- Best Category: 14/94 optics -- Quartile: 1

Papers in Journals

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Lookup table-based sampling of the phase function for Monte Carlo simulations of light propagation in turbid media

Biomedical Optics Express, 8(3):1895-1910, 2017

JCR Impact Factor: 3.482 (2017) -- Best Category: 15/94 optics -- Quartile: 1

Papers in Journals

Matic Ivančič, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Virtually increased acceptance angle for efficient estimation of spatially resolved reflectance in the subdiffusive regime: a Monte Carlo study

Biomedical Optics Express, 8(11):4872-4886, 2017

JCR Impact Factor: 3.482 (2017) -- Best Category: 15/94 optics -- Quartile: 1

Papers in Conference Proceedings

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Estimation of optical properties from subdiffusive reflectance beyond the second similarity parameter γ

SPIE European Conference on Biomedical Optics 2017: Diffuse Optical Spectroscopy and Imaging VI, Jun 25-29, Munich, Germany (H. Dehghani, H. Wabnitz, Eds.), 10412:1041205, 2017

Papers in Conference Proceedings

Matic Ivančič, Peter Naglič, Boštjan Likar, Franjo Pernuš, Miran Bürmen

The role of numerical aperture in efficient estimation of spatially resolved reflectance by a Monte Carlo light propagation model

SPIE Photonics West 2017: Optical Interactions with Tissue and Cells XXVIII, Jan 28 - Feb 2, San Francisco, CA, USA (E. D. Jansen, H. T. Beier, Eds.), 10062:100621B, 2017

Doctoral Disssertations

Peter Naglič

Modeling of light propagation in turbid media for fiber optic reflectance spectroscopy

PhD thesis: University of Ljubljana, Faculty of Electrical Engineering, Slovenia (M. Bürmen), 2017

Papers in Journals

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Estimation of optical properties by spatially resolved reflectance spectroscopy in the subdiffusive regime

Journal of Biomedical Optics, 21(9):095003, 2016

JCR Impact Factor: 2.530 (2016) -- Best Category: 40/126 radiology, nuclear medicine & medical imaging -- Quartile: 2

Papers in Journals

Blaž Cugmas, Peter Naglič

Obstojnost črnil v vodnih fantomih za uporabo z difuzno reflektančno spektroskopijo

Elektrotehniški vestnik - Electrotechnical Review, 83(3):93-98, 2016

Papers in Conference Proceedings

Matic Ivančič, Peter Naglič, Peter Usenik, Aleš Fidler, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Extraction of optical properties from hyperspectral images by Monte Carlo light propagation model

SPIE Photonics West 2016: Optical Interactions with Tissue and Cells XXVII, Tissue Optics and Optical Properties of Tissue III, Feb 13-18, San Francisco, CA, USA (E. D. Jansen, Ed.), 9706:97061A, 2016

Papers in Conference Proceedings

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Extraction of optical properties in the sub-diffuse regime by spatially resolved reflectance spectroscopy

SPIE Photonics West 2016: Optical Interactions with Tissue and Cells XXVII, Tissue Optics and Optical Properties of Tissue IV, Feb 13-18, San Francisco, CA, USA (E. D. Jansen, Ed.), 9706:97061C, 2016

Papers in Journals

Blaž Cugmas, Tanja Plavec, Maksimilijan Bregar, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Detection of canine skin and subcutaneous tumors by visible and near-infrared diffuse reflectance spectroscopy

Journal of Biomedical Optics, 20(3):037003, 2015

JCR Impact Factor: 2.556 (2015) -- Best Category: 21/90 optics -- Quartile: 1

Papers in Journals

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Limitations of the commonly used simplified laterally uniform optical fiber probe-tissue interface in Monte Carlo simulations of diffuse reflectance

Biomedical Optics Express, 6(10):3973-3988, 2015

JCR Impact Factor: 3.344 (2015) -- Best Category: 12/90 optics -- Quartile: 1

Papers in Journals

Maksimilijan Bregar, Blaž Cugmas, Peter Naglič, Daniela Hartmann, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Properties of contact pressure induced by manually operated fiber-optic probes

Journal of Biomedical Optics, 20(12):127002, 2015

JCR Impact Factor: 2.556 (2015) -- Best Category: 21/90 optics -- Quartile: 1

Papers in Conference Proceedings

Peter Naglič, Maksimilijan Bregar, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Accuracy of experimental data and Monte Carlo simulation lookup table-based inverse models for assessment of turbid media optical properties with diffuse reflectance spectroscopy

SPIE Photonics West 2015: Biophotonics (BiOS), Biomedical Applications of Light Scattering IX, Feb 7-12, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 9333:933310-1-9, 2015

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