Our Publications

Publications for 'Tomaž Vrtovec'

Papers in Conference Proceedings

Gašper Podobnik, Domen Ocepek, Luka Škrlj, Tomaž Vrtovec

Implicitly explicit: segmenting vertebrae with deep implicit statistical shape models

4th International Workshop on Shape in Medical Imaging, ShapeMI 2024, Held in Conjunction with MICCAI 2024, Oct 6, Marrakesh, Morocco, Lecture Notes in Computer Science 15275:59-69, 2025

Papers in Journals

Sepideh Amiri, Reza Karimzadeh, Tomaž Vrtovec, Erik Gudmann Steuble Brandt, Henrik S. Thomsen, Michael Brun Andersen, Christoph Felix Müller, Anders Bertil Rodell, Bulat Ibragimov

Centerline-guided reinforcement learning model for pancreatic duct identifications

Journal of Medical Imaging, 11(6):064002, 2024

JCR Impact Factor: 1.9 (2023) -- Best Category: 103/204 radiology, nuclear medicine & medical imaging -- Quartile: 3

Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Elias Tappeiner, Chanwoong Lee, Jin Sung Kim, Zacharia Mesbah, Romain Modzelweski, Yihao Ma, Fan Yang, Mikołaj Rudecki, Marek Wodziński, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

HaN-Seg: The head and neck organ-at-risk CT and MR segmentation challenge

Radiotherapy and Oncology, 198:110410, 2024

JCR Impact Factor: 4.9 (2023) -- Best Category: 20/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Sepideh Amiri, Tomaž Vrtovec, Tamerlan Mustafaev, Christopher L. Deufel, Henrik S. Thomsen, Martin Hylleholt Sillesen, Erik Gudmann Steuble Brandt, Michael Brun Andersen, Christoph Felix Müller, Bulat Ibragimov

Reinforcement learning-based anatomical maps for pancreas sub-region and duct segmentation

Medical Physics, 51(10):7378-7392, 2024

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

vOARiability: interobserver and intermodality variability analysis in OAR contouring from head and neck CT and MR images

Medical Physics, 51(3):2175-2186, 2024

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Conference Proceedings

Domen Ocepek, Gašper Podobnik, Bulat Ibragimov, Tomaž Vrtovec

Deep implicit statistical shape models for 3D lumbar vertebrae image delineation

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292638, 2024

Papers in Conference Proceedings

Luka Škrlj, Matija Jelenc, Tomaž Vrtovec

Deep learning-based landmark localization in 3D CT images of the heart: method and dataset comparison

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:129260F, 2024

Papers in Conference Proceedings

Gašper Podobnik, Tomaž Vrtovec

HDilemma: Are open-source Hausdorff distance implementations equivalent?

27th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, Oct 6-10, Marrakesh, Morocco, Lecture Notes in Computer Science 15009:308-317, 2024

Papers in Conference Proceedings

Kamil Ibragimov, Gašper Podobnik, Teodor Trojner, Gregor Rečnik, Tomaž Vrtovec

Mid-sagittal cross-section identification for vertebra landmarking in MR spine images

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292637, 2024

Papers in Conference Proceedings

Tomaž Vrtovec, Luka Škrlj

Zgodnje odkrivanje tveganja nenalezljivih bolezni pri bolnikih z rakom dojk na podlagi umetne inteligence (projekt ARTILLERY)

35. onkološki vikend: Umetna inteligenca v onkologiji in spremljanje bolnikov z rakom po zaključenem zdravljenju, 10. in 11. maj 2024, Portorož, Slovenija, 30-37, 2024

Other Publications

Gašper Podobnik, Tomaž Vrtovec

Metrics Revolutions: Groundbreaking insights into the implementation of metrics for biomedical image segmentation

arXiv, 2410.02630, 2024

Papers in Journals

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

HaN-Seg: The head and neck organ-at-risk CT & MR segmentation dataset

Medical Physics, 50(3):1917-1927, 2023

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Conference Proceedings

Luka Škrlj, Matija Jelenc, Tomaž Vrtovec

Detection of aortic cusp landmarks in computed tomography images with deep learning

12th International Conference on Functional Imaging and Modeling of the Heart - FIMH 2023, Jun 19-22, Lyon, France (O. Bernard et al., Eds.), Lecture Notes in Computer Science 13958:301-309, 2023

Papers in Conference Proceedings

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Multimodal CT and MR segmentation of head and neck organs-at-risk

26th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, Oct 8-12, Vancouver, Canada, Lecture Notes in Computer Science 14223:745-755, 2023

Papers in Conference Proceedings

Luka Škrlj, Matija Jelenc, Franjo Pernuš, Tomaž Vrtovec

Zaznavanje oslonilnih točk aortne zaklopke v CT slikah s postopkom globokega učenja

17. strokovna konferenca o računalniški obdelavi slik in njeni uporabi v Sloveniji - ROSUS 2023, 20. marec, Maribor, Slovenija (B. Potočnik, ur.), 61-68, 2023

Abstracts in Conference Proceedings

Sofie Gernaat, Ivana Isgum, Arco Teske, Nadia Harbeck, Marleen De Bruijne, Darja Molan, Rieke Van Der Graaf, Eva Batista, Tomaž Vrtovec, Lourens Robbers, Maja Maraldo, Femke Van Der Leij, Helena Verkooijen

74: The ARTILLERY project: developing, validating and prospectively evaluating trustworthy AI systems for early detection of cardiovascular disease risk in women with breast cancer using routine CT scans

Global Cardio Oncology Summit - GCOS 2023, Sep 27-29, Madrid, Spain, 2023

Abstracts in Conference Proceedings

Tomaž Vrtovec

The use of AI in orthopedic image analysis

Annual Spine Experts Group Meeting 2023, Nov 30-Dec 1, Ljubljana, Slovenia, 43, 2023

Other Publications

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

HaN-Seg: the head and neck organ-at-risk CT & MR segmentation dataset

Zenodo, 2023

Papers in Journals

Danis Alukaev, Semen Kiselev, Tamerlan Mustafaev, Ahatov Ainur, Bulat Ibragimov, Tomaž Vrtovec

A deep learning framework for vertebral morphometry and Cobb angle measurement with external validation

European Spine Journal, 31(8):2115-2124, 2022

JCR Impact Factor: 2.8 (2022) -- Best Category: 27/86 orthopedics -- Quartile: 2

Papers in Journals

Ivana Išgum, Bennett A. Landman, Tomaž Vrtovec

Advances in High-Dimensional Medical Image Processing

Journal of Medical Imaging, 9(5):052401, 2022

JCR Impact Factor: 2.4 (2022) -- Best Category: 68/202 radiology, nuclear medicine & medical imaging -- Quartile: 2

Papers in Journals

Imad Eddine Ibrahim Bekkouch, Bulat Maksudov, Semen Kiselev, Tamerlan Mustafaev, Tomaž Vrtovec, Bulat Ibragimov

Multi-landmark environment analysis with reinforcement learning for pelvic abnormality detection and quantification

Medical Image Analysis, 78:102417, 2022

JCR Impact Factor: 10.9 (2022) -- Best Category: 3/135 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Bulat Ibragimov

Spinopelvic measurements of sagittal balance with deep learning: systematic review and critical evaluation

European Spine Journal, 31(8):2031-2045, 2022

JCR Impact Factor: 2.8 (2022) -- Best Category: 27/86 orthopedics -- Quartile: 2

Papers in Conference Proceedings

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Parotid gland segmentation with nnU-Net: deployment scenario and inter-observer variability analysis

SPIE Medical Imaging 2022: Image Processing, Feb 20-24, San Diego, CA, USA (I. Išgum, O. Colliot, Eds.), 12032:120321N, 2022

Papers in Conference Proceedings

Gašper Podobnik, Bulat Ibragimov, Primož Strojan, Primož Peterlin, Tomaž Vrtovec

Segmentation of organs-at-risk from CT and MR images of the head and neck: baseline results

19th IEEE Symposium on Biomedical Imaging - ISBI 2022, Mar 28-31, Kolkata India, 2022

Papers in Conference Proceedings

Imad Eddine Ibrahim Bekkouch, Tamerlan Aidinovich, Tomaž Vrtovec, Ramil Kuleev, Bulat Ibragimov

Multi-agent shape models for hip landmark detection in MR scans

SPIE Medical Imaging 2021: Image Processing, Feb 15-20, San Diego, CA, USA (I. Išgum, B. A. Landman, Eds.), 11596:115960O, 2021

Papers in Journals

Robert Korez, Michael Putzier, Tomaž Vrtovec

A deep learning tool for fully automated measurements of sagittal spinopelvic balance from X-ray images: performance evaluation

European Spine Journal, 29(9):2295-2305, 2020

JCR Impact Factor: 3.314 (2020) -- Best Category: 23/82 orthopedics -- Quartile: 2

Papers in Journals

Tomaž Vrtovec, Domen Močnik, Primož Strojan, Franjo Pernuš, Bulat Ibragimov

Auto-segmentation of organs at risk for head and neck radiotherapy planning: from atlas-based to deep learning methods

Medical Physics, 47(9):e929-e950, 2020

JCR Impact Factor: 4.071 (2020) -- Best Category: 27/186 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Dejan Knez, Tomaž Vrtovec

Computerized three-dimensional pedicle morphometry from computed tomography images of the thoracic spine

Image Analysis & Stereology, 39(2):101-109, 2020

JCR Impact Factor: 0.682 (2020) -- Best Category: 239/265 mathematics, applied -- Quartile: 4

Papers in Journals

Maksym Kholiavchenko, Ilyas Sirazitdinov, Konstantin Kubrak, Rushania Badrutdinova, Ramil Kuleev, Yuxian Yuan, Tomaž Vrtovec, Bulat Ibragimov

Contour-aware multi-label chest X-ray organ segmentation

International Journal of Computer Assisted Radiology and Surgery, 15(4):425-436, 2020

JCR Impact Factor: 2.155 (2018) -- Best Category: 83/203 surgery -- Quartile: 2

Papers in Journals

Dejan Knez, Imad S. Nahle, Tomaž Vrtovec, Stefan Parent, Samuel Kadoury

Computer-assisted pedicle screw trajectory planning using CT-inferred bone density: a demonstration against surgical outcomes

Medical Physics, 46(8):3543-3554, 2019

JCR Impact Factor: 3.177 (2018) -- Best Category: 35/129 radiology, nuclear medicine & medical imaging -- Quartile: 2

Papers in Journals

Rob C. Brink, Ludvig Vavruch, Tom P. C. Schlösser, Kasim Abul‑Kasim, Acke Ohlin, Hans Tropp, René M. Castelein, Tomaž Vrtovec

Three‑dimensional pelvic incidence is much higher in (thoraco)lumbar scoliosis than in controls

European Spine Journal, 28(3):544-550, 2019

JCR Impact Factor: 2.513 (2018) -- Best Category: 23/76 orthopedics -- Quartile: 2

Papers in Conference Proceedings

Robert Korez, Michael Putzier, Tomaž Vrtovec

Automated measurement of pelvic incidence from X-ray images

6th International Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MSKI 2018, held in conjunction with the 21th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, Lecture Notes in Computer Science 11404:146-152, 2019

Books and Book Chapters

Tomaž Vrtovec, Jianhua Yao, Guoyan Zheng, Jose M. Pozo

6th International Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging, MSKI 2017, held in conjunction with MICCAI 2018, Sep 16, Granada, Spain

Lecture Notes in Computer Science, 11404, 2019

Papers in Journals

Alan Petrônio Pinheiro, Júlio Cézar Coelho, Antônio C. Paschoarelli Veiga, Tomaž Vrtovec

A computerized method for evaluating scoliotic deformities using elliptical pattern recognition in X-ray spine images

Computer Methods and Programs in Biomedicine, 161:85-92, 2018

JCR Impact Factor: 3.424 (2018) -- Best Category: 15/104 computer science, theory & methods -- Quartile: 1

Papers in Journals

Tomaž Vrtovec

Image Analysis & Stereology: 2017 research highlights

Image Analysis & Stereology, 37(1):1001-1007, 2018

JCR Impact Factor: 1.778 (2018) -- Best Category: 53/254 mathematics, applied -- Quartile: 1

Papers in Journals

Uroš Petković, Robert Korez, Stefan Parent, Samuel Kadoury, Tomaž Vrtovec

Polavtomatsko merjenje 3D Cobbovega kota na trikotniški mreži modela hrbtenice

Elektrotehniški vestnik - Electrotechnical Review, 85(1-2):1-6, 2018

Papers in Journals

Robert Korez, Michael Putzier, Tomaž Vrtovec

Računalniško podprto merjenje parametrov sagitalne orientacije medenice iz rentgenskih slik

Zdravniški vestnik, 87(11-12):519-529, 2018

Papers in Journals

Domen Močnik, Bulat Ibragimov, Lei Xing, Primož Strojan, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of parotid glands from registered CT and MR images

Physica Medica, 52:33-41, 2018

JCR Impact Factor: 2.532 (2018) -- Best Category: 53/129 radiology, nuclear medicine & medical imaging -- Quartile: 2

Papers in Journals

Dejan Knez, Janez Mohar, Robert J. Cirman, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Variability analysis of manual and computer-assisted preoperative thoracic pedicle screw placement planning

Spine, 43(21):1487-1495, 2018

JCR Impact Factor: 2.903 (2018) -- Best Category: 19/76 orthopedics -- Quartile: 1

Papers in Conference Proceedings

Uroš Petković, Robert Korez, Stefan Parent, Samuel Kadoury, Tomaž Vrtovec

3D Cobb angle measurements from scoliotic mesh models with varying face-vertex density

5th Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), Lecture Notes in Computer Science 10734:48-58, 2018

Papers in Conference Proceedings

Dejan Knez, Imad S. Nahle, Tomaž Vrtovec, Stefan Parent, Samuel Kadoury

Computer-assisted pedicle screw placement planning: towards clinical practice

15th IEEE International Symposium on Biomedical Imaging - ISBI 2018, Apr 4-7, Washington, DC, USA (A. Amini, S. Acton, Eds.), 249-252, 2018

Papers in Conference Proceedings

Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of pathological spines in CT images using a two-way CNN and a collision-based model

5th International Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MSKI 2017, held in conjunction with the 20th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), Lecture Notes in Computer Science 10734:95-107, 2018

Abstracts in Conference Proceedings

Olivier Turcot, Dejan Knez, Tomaž Vrtovec, Samuel Kadoury, Stefan Parent

Predictive model of spine correction following anterior vertebral body growth modulation in adolescent with idiopathic scoliosis

25th International Meeting of the Scoliosis Research Society on Advanced Spine Techniques - SRS-IMAST 2018, Jul 11-14, Los Angeles, CA, USA (R. A. Lehman et al., Eds.), 102, 2018

Books and Book Chapters

Ben Glocker, Jianhua Yao, Tomaž Vrtovec, Alejandro Frangi, Guoyan Zheng

5th International Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging, MSKI, 2017, held in conjunction with MICCAI 2017, Sep 10, Quebec City, QC, Canada

Lecture Notes in Computer Science, 10734, 2018

Papers in Journals

Guoyan Zheng, Chengwen Chu, Daniel L. Belavy, Bulat Ibragimov, Robert Korez, Tomaž Vrtovec, Hugo Hutt, Richard Everson, Judith Meakin, Isabel Lopez Andrade, Ben Glocker, Hao Chen, Qi Dou, Pheng-Ann Heng, Chunliang Wang, Daniel Forsberg, Aleš Neubert, Jurgen Fripp, Martin Urschler, Darko Štern, Maria Wimmer, Alexey A. Novikov, Hui Cheng, Gabriele Armbrecht, Dieter Felsenberg, Shuo Li

Evaluation and comparison of 3D intervertebral disc localization and segmentation methods for 3D T2 MR data: a grand challenge

Medical Image Analysis, 35:327-344, 2017

JCR Impact Factor: 5.356 (2017) -- Best Category: 6/105 computer science, interdisciplinary applications -- Quartile: 1

Papers in Journals

Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Lei Xing, Tomaž Vrtovec

Segmentation of pathological structures by landmark-assisted deformable models

IEEE Transactions on Medical Imaging, 36(7):1457-1469, 2017

JCR Impact Factor: 6.131 (2017) -- Best Category: 3/105 computer science, interdisciplinary applications -- Quartile: 1

Papers in Journals

Tom P.C. Schlösser, Michiel M.A. Janssen, Tom Hogervorst, Tomaž Vrtovec, John de Vos, F. Cumhur Öner, René M. Castelein

The odyssey of sagittal pelvic morphology during human evolution: a perspective on different hominoidae

The Spine Journal, 17(8):1202-1206, 2017

JCR Impact Factor: 3.119 (2017) -- Best Category: 11/77 orthopedics -- Quartile: 1

Papers in Journals

Miha Vodičar, Robert Košak, Matevž Gorenšek, Robert Korez, Tomaž Vrtovec, Jadran Koder, Vane Antolič, Rok Vengust

Vertebral end plate perforation for intervertebral disc height preservation after single level lumbar discectomy: a randomized controlled trial

Clinical Spine Surgery, 30(6):E707-E712, 2017

JCR Impact Factor: 1.987 (2017) -- Best Category: 35/77 orthopedics -- Quartile: 2

Papers in Conference Proceedings

Uroš Petković, Robert Korez, Stefan Parent, Samuel Kadoury, Tomaž Vrtovec

3D Cobb angle measurements from scoliotic mesh models with varying face-vertex density

5th Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), 46-55, 2017

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Intervertebral disc segmentation in MR images with 3D convolutional networks

SPIE Medical Imaging 2017: Image Processing, Feb 11-16, Orlando, FL, USA (M. A. Styner, E. D. Angelini, Eds.), 10133:1013306, 2017

Papers in Conference Proceedings

Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of pathological spines in CT images using a two-way CNN and a collision-based model

5th Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), 91-103, 2017

Papers in Conference Proceedings

Uroš Petković, Robert Korez, Tomaž Vrtovec

Semi-automated measurement of the Cobb angle from 3D mesh models of the scoliotic spine

10th IEEE International Symposium on Image and Signal Processing and Analysis - ISPA 2017, Sep 18-20, Ljubljana, Slovenia, 137-140, 2017

Abstracts in Conference Proceedings

David Martinčič, Miha Brojan, Franc Kosel, Darko Štern, Tomaž Vrtovec, Vane Antolič, Rok Vengust

Optimal cement volume for vertebroplasty

Annual Spine Experts Group Meeting & Slovenia 2017 Spine Symposium, Nov 24-25, Ljubljana, Slovenia, 8, 2017

Abstracts in Conference Proceedings

Dejan Knez, Imad S. Nahle, Stefan Parent, Samuel Kadoury, Tomaž Vrtovec

Quantitative comparison of computer-assisted pedicle screw placement plans with actually inserted pedicle screws

Annual Spine Experts Group Meeting & Slovenia 2017 Spine Symposium, Nov 24-25, Ljubljana, Slovenia, 31, 2017

Abstracts in Conference Proceedings

Rob C. Brink, Ludvig Vavruch, Tom P.C. Schlösser, Kasim Abul-Kasim, Acke Ohlin, Hans Tropp, René M. Castelein, Tomaž Vrtovec

Three-dimensional pelvic incidence is much higher in (thoraco)lumbar scoliosis than in thoracic scoliosis and controls

Meeting of the Nordic Spinal Deformities Society - NSDS 2017, Aug 24-26, Stockholm, Sweden, 2017

Abstracts in Conference Proceedings

Rob Brink, Ludvig Vavruch, Tom Schlösser, Kasim Abul-Kasim, Acke Ohlin, Hans Tropp, René Castelein, Tomaž Vrtovec

Three-dimensional pelvic incidence is much higher in (thoraco)lumbar scoliosis than in thoracic scoliosis and controls

Annual Spine Experts Group Meeting & Slovenia 2017 Spine Symposium, Nov 24-25, Ljubljana, Slovenia, 20, 2017

Books and Book Chapters

Bulat Ibragimov, Tomaž Vrtovec

Landmark-based statistical shape representations

Chapter 4 of the book Statistical Shape and Deformation Analysis (Academic Press, Elsevier), 89-113, 2017

Papers in Journals

Ching-Wei Wang, Cheng-Ta Huang, Jia-Hong Lee, Chung-Hsing Li, Sheng-Wei Chang, Ming-Jhih Siao, Tat-Ming Lai, Bulat Ibragimov, Tomaž Vrtovec, Olaf Ronneberger, Philipp Fischer, Tim F. Cootes, Claudia Lindner

A benchmark for comparison of dental radiography analysis algorithms

Medical Image Analysis, 31:63-76, 2016

JCR Impact Factor: 4.188 (2016) -- Best Category: 8/105 computer science, interdisciplinary applications -- Quartile: 1

Papers in Journals

Jianhua Yao, Joseph E. Burns, Daniel Forsberg, Alexander Seitel, Abtin Rasoulian, Purang Abolmaesumi, Kerstin Hammernik, Martin Urschler, Bulat Ibragimov, Robert Korez, Tomaž Vrtovec, Isaac Castro-Mateos, Jose M. Pozo, Alejandro F. Frangi, Ronald M. Summers, Shuo Li

A multi-center milestone study of clinical vertebral CT segmentation

Computerized Medical Imaging and Graphics, 49:16-28, 2016

JCR Impact Factor: 1.738 (2016) -- Best Category: 72/126 radiology, nuclear medicine & medical imaging -- Quartile: 3

Papers in Journals

Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Computer-assisted screw size and insertion trajectory planning for pedicle screw placement surgery

IEEE Transactions on Medical Imaging, 35(6):1420-1430, 2016

JCR Impact Factor: 3.942 (2016) -- Best Category: 9/105 computer science, interdisciplinary applications -- Quartile: 1

Papers in Journals

Dejan Knez, Janez Mohar, Robert J. Cirman, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Določanje velikosti in vstavitvene trajektorije pedikularnih vijakov v računalniškotomografskih (CT) slikah deformacij prsne hrbtenice: primerjava ročnega in računalniško podprtega predoperacijskega načrtovanja

Zdravniški vestnik, 85(11-12):619-631, 2016

Papers in Journals

Tom P.C. Schlösser, Michiel M.A. Janssen, Tomaž Vrtovec, René M. Castelein

Letter to the editor concerning ‘‘Pelvic incidence: an anatomic investigation of 880 cadaveric specimens’’ by Weinberg DS, Morris WZ, Gebhart JJ, Liu RW: Eur Spine J (2015), doi: 10.1007/s00586-015-4317-z

European Spine Journal, 25(9):3004-3005, 2016

JCR Impact Factor: 2.563 (2016) -- Best Category: 18/76 orthopedics -- Quartile: 1

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Accurate landmark-based segmentation by incorporating landmark misdetections

13th IEEE International Symposium on Biomedical Imaging - ISBI 2016, Apr 12-16, Prague, Czech Republic (J. Kybic, M. Sonka, Eds.), 1072-1075, 2016

Papers in Conference Proceedings

Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated determination of pedicle morphometry in the thoracic spine

13th IEEE International Symposium on Biomedical Imaging - ISBI 2016, Apr 12-16, Prague, Czech Republic (J. Kybic, M. Sonka, Eds.), 664-667, 2016

Papers in Conference Proceedings

Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated pedicle screw size and trajectory planning by maximization of fastening strength

3rd International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), Lecture Notes in Computer Science 9402:3-13, 2016

Papers in Conference Proceedings

Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Avtomatska metoda načrtovanja velikosti in trajektorije pedikularnih vijakov

11. strokovna konferenca o računalniški obdelavi slik in njeni uporabi v Sloveniji - ROSUS 2016, 17. marec, Maribor, Slovenija (B. Potočnik, ur.), 55-68, 2016

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor

3rd International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), Lecture Notes in Computer Science 9402:117-124, 2016

Papers in Conference Proceedings

Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Joint detection and segmentation of vertebral bodies in CT images by sparse representation error minimization

SPIE Medical Imaging 2016: Image Processing, Feb 27 - Mar 3, San Diego, CA, USA (M. A. Styner, E. D. Angelini, Eds.), 9784:97842Y, 2016

Papers in Conference Proceedings

Dejan Knez, Janez Mohar, Robert J. Cirman, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Manual and computer-assisted pedicle screw placement plans: a quantitative comparison

4th Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2016, Oct 17, Athens, Greece (J. Yao et al., Eds.), 78-88, 2016

Papers in Conference Proceedings

Dejan Knez, Janez Mohar, Robert J. Cirman, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Manual and computer-assisted pedicle screw placement plans: a quantitative comparison

4th International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2016, held in conjunction with the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Oct 17, Athens, Greece (J. Yao et al., Eds.), Lecture Notes in Computer Science 10182:105-115, 2016

Papers in Conference Proceedings

Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Model-based segmentation of vertebral bodies from MR images with 3D CNNs

19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Oct 17-21, Athens, Greece (S. Ourselin et al., Eds.), Lecture Notes in Computer Science 9901:433-441, 2016

Papers in Conference Proceedings

Dejan Knez, Janez Mohar, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Quantitative comparison between the straight-forward and anatomical insertion technique for pedicle screw placement

SPIE Medical Imaging 2016: Image Processing, Feb 27 - Mar 3, San Diego, CA, USA (M. A. Styner, E. D. Angelini, Eds.), 9784:978439, 2016

Papers in Conference Proceedings

Robert Korez, Benjamin Aubert, Thierry Cresson, Stefan Parent, Tomaž Vrtovec, Jacques de Guise, Samuel Kadoury

Sparse and multi-object pose+shape modeling of the three-dimensional scoliotic spine

13th IEEE International Symposium on Biomedical Imaging - ISBI 2016, Apr 12-16, Prague, Czech Republic (J. Kybic, M. Sonka, Eds.), 225-228, 2016

Abstracts in Conference Proceedings

Janez Mohar, Dejan Knez, Robert J. Cirman, Rihard Trebše, Rene Mihalič, Tomaž Vrtovec

Comparison of automatically and manually obtained pedicle screw plans in deformities of the thoracic spine

29th Annual Congress of the International Society for Technology in Arthoplasty - ISTA 2016, Oct 5-8, Boston, MA, USA (S. B. Murphy, Ed.), #4334, 2016

Books and Book Chapters

Tomaž Vrtovec, Jianhua Yao, Ben Glocker, Tobias Klinder, Alejandro Frangi, Guoyan Zheng, Shuo Li

3rd International Workshop on Computational Methods and Clinical Applications for Spine Imaging, CSI 2015, held in conjunction with MICCAI 2015, Oct 5, Munich, Germany

Lecture Notes in Computer Science, 9402, 2016

Books and Book Chapters

Jianhua Yao, Tomaž Vrtovec, Guoyan Zheng, Alejandro Frangi, Ben Glocker, Shuo Li

4th International Workshop on Computational Methods and Clinical Applications for Spine Imaging, CSI 2016, held in conjunction with MICCAI 2016, Oct 17, Athens, Greece

Lecture Notes in Computer Science, 10182, 2016

Papers in Journals

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

A framework for automated spine and vertebrae interpolation-based detection and model-based segmentation

IEEE Transactions on Medical Imaging, 34(8):1649-1662, 2015

JCR Impact Factor: 3.756 (2015) -- Best Category: 13/255 engineering, electrical & electronic -- Quartile: 1

Papers in Journals

Ching-Wei Wang, Cheng-Ta Huang, Meng-Che Hsieh, Chung-Hsing Li, Sheng-Wei Chang, Wei-Cheng Li, Rémy Vandaele, Raphaël Marée, Sébastien Jodogne, Pierre Geurts, Cheng Chen, Guoyan Zheng, Chengwen Chu, Hengameh Mirzaalian, Ghassan Hamarneh, Tomaž Vrtovec, Bulat Ibragimov

Evaluation and comparison of anatomical landmark detection methods for cephalometric X-ray images: a grand challenge

IEEE Transactions on Medical Imaging, 34(9):1890-1900, 2015

JCR Impact Factor: 3.756 (2015) -- Best Category: 13/255 engineering, electrical & electronic -- Quartile: 1

Papers in Journals

David Martinčič, Miha Brojan, Franc Kosel, Darko Štern, Tomaž Vrtovec, Rok Vengust

Minimum cement volume for vertebroplasty

International Orthopaedics, 39(4):727-733, 2015

JCR Impact Factor: 2.387 (2015) -- Best Category: 19/74 orthopedics -- Quartile: 2

Papers in Journals

Bulat Ibragimov, Jerry L. Prince, Emi Z. Murano, Jonghye Woo, Maureen Stone, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of tongue muscles from super-resolution magnetic resonance images

Medical Image Analysis, 20(1):198-207, 2015

JCR Impact Factor: 4.565 (2015) -- Best Category: 4/104 computer science, interdisciplinary applications -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Variability of manual and computerized methods for measuring coronal vertebral inclination in computed tomography images

Image Analysis & Stereology, 34(3):199-208, 2015

JCR Impact Factor: 0.500 (2015) -- Best Category: 210/254 mathematics, applied -- Quartile: 4

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:85-94, 2015

Papers in Conference Proceedings

Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated pedicle screw size and trajectory planning by maximization of fastening strength

3rd Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), 3-13, 2015

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor

3rd Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), 111-118, 2015

Papers in Conference Proceedings

Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based detection of lumbar vertebrae in CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:73-84, 2015

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:235-240, 2015

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Optimal reinforcement of training datasets in semi-supervised landmark-based segmentation

SPIE Medical Imaging 2015: Image Processing, Feb 21-26, Orlando, FL, USA (S. Ourselin, M. A. Styner, Eds.), 9413:94132K-1-6, 2015

Abstracts in Conference Proceedings

Miha Vodičar, Robert Košak, Matevž Gorenšek, Robert Korez, Tomaž Vrtovec, Jadran Koder, Rok Vengust

Does vertebral end plate perforation cause annulus reparation and intervertebral space restoration? A pilot randomized controlled trial

16th Annual Congress of the European Federation of National Associations of Orthopaedics and Traumatology - EFORT 2015, May 27-29, Prague, Czech Republic, #2757, 2015

Abstracts in Conference Proceedings

Miha Vodičar, Robert Košak, Matevž Gorenček, Robert Korez, Tomaž Vrtovec, Jadran Koder, Rok Vengust

Intervertebral space restoration after lumbar discectomy: is vertebral end plate perforation the answer? (P80)

European Spine Journal, 24(Suppl 6):S743-S800, 2015

JCR Impact Factor: 2.132 (2015) -- Best Category: 24/74 orthopedics -- Quartile: 2

Abstracts in Conference Proceedings

David Martinčič, Miha Brojan, Franc Kosel, Darko Štern, Tomaž Vrtovec, Rok Vengust

Optimal cement volume for vertebroplasty – biomechanical study

16th Annual Congress of the European Federation of National Associations of Orthopaedics and Traumatology - EFORT 2015, May 27-29, Prague, Czech Republic, #1780, 2015

Books and Book Chapters

Tomaž Vrtovec

Automated determination of the spine-based coordinate system for an efficient cross-sectional visualization of 3D spine images

Chapter 8 of the book Spinal Imaging and Image Analysis (S. Li, J. Yao, Eds.), Springer, Lecture Notes in Computational Vision and Biomechanics 18:231-299, 2015

Papers in Journals

Tom P.C. Schlösser, Michiel M.A. Janssen, Tomaž Vrtovec, Franjo Pernuš, F. Cumhur Öner, Max A. Viergever, Koen L. Vincken, René M. Castelein

Evolution of the ischio-iliac lordosis during natural growth and its relation with the pelvic incidence

European Spine Journal, 23(7):1433-1441, 2014

JCR Impact Factor: 2.066 (2014) -- Best Category: 23/72 orthopedics -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Investigation of the reproducibility and reliability of sagittal vertebral inclination measurements from MR images of the spine

Computerized Medical Imaging and Graphics, 38(7):620-627, 2014

JCR Impact Factor: 1.218 (2014) -- Best Category: 53/76 engineering, biomedical -- Quartile: 3

Papers in Journals

Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Parametric modeling of the intervertebral disc space in 3D: application to CT images of the lumbar spine

Computerized Medical Imaging and Graphics, 38(7):596-605, 2014

JCR Impact Factor: 1.218 (2014) -- Best Category: 53/76 engineering, biomedical -- Quartile: 3

Papers in Journals

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Shape representation for efficient landmark-based segmentation in 3D

IEEE Transactions on Medical Imaging, 33(4):861-874, 2014

JCR Impact Factor: 3.390 (2014) -- Best Category: 18/249 engineering, electrical & electronic -- Quartile: 1

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 76-85, 2014

Papers in Conference Proceedings

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Comparison of manual and computerized measurements of sagittal vertebral inclination in MR images

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2013, held in conjunctin with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 17:111-121, 2014

Papers in Conference Proceedings

Robert Korez, Darko Štern, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Determination of the intervertebral disc space from CT images of the lumbar spine

SPIE Medical Imaging 2014: Image Processing, Feb 15-20, San Diego, CA, USA (S. Ourselin, M. A. Styner, Eds.), 9034:90342Q, 2014

Papers in Conference Proceedings

Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based detection of lumbar vertebrae in CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 65-75, 2014

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 208-213, 2014

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2013, held in conjunctin with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 17:3--14, 2014

Abstracts in Conference Proceedings

Tom P.C. Schlösser, Michiel M.A. Janssen, Tomaž Vrtovec, Franjo Pernuš, F. Cumhur Öner, Max A. Viergever, Koen L. Vincken, René M. Castelein

EPOS 33rd Annual Meeting: The development of the ischio-iliac lordosis during growth as an essential adaptation towards human bipedalism and a determinant of sagittal balance (OP46)

Journal of Childrens Orthopaedics, 8(Suppl 1):S7-S54, 2014

Abstracts in Conference Proceedings

Tom P.C. Schlösser, Michiel M.A. Janssen, Tomaž Vrtovec, Franjo Pernuš, F. Cumhur Öner, Max A. Viergever, Koen L. Vincken, René M. Castelein

Eurospine 2014: The development of the ischio-iliac lordosis during growth as an essential adaptation towards human bipedalism and a determinant of sagittal balance (OP53)

European Spine Journal, 23(Suppl 5):S469-S496, 2014

JCR Impact Factor: 2.066 (2014) -- Best Category: 23/72 orthopedics -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Michiel M.A. Janssen, Boštjan Likar, René M. Castelein, Max A. Viergever, Franjo Pernuš

Evaluation of pelvic morphology in the sagittal plane

The Spine Journal, 13(11):1500-1509, 2013

JCR Impact Factor: 2.800 (2013) -- Best Category: 11/67 orthopedics -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Manual and computerized measurement of coronal vertebral inclination on MRI images: a pilot study

Clinical Radiology, 68(8):807-814, 2013

JCR Impact Factor: 1.663 (2013) -- Best Category: 63/121 radiology, nuclear medicine & medical imaging -- Quartile: 3

Papers in Journals

Darko Štern, Vesna Njagulj, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Quantitative vertebral morphometry based on parametric modeling of vertebral bodies in 3D

Osteoporosis International, 24(4):1357-1368, 2013

JCR Impact Factor: 4.165 (2013) -- Best Category: 30/123 endocrinology & metabolism -- Quartile: 1

Papers in Journals

Michiel M.A. Janssen, Koen L. Vincken, Sjoerd M. van Raak, Tomaž Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels, René M. Castelein

Sagittal spinal profile and spinopelvic balance in parents of scoliotic children

The Spine Journal, 13(12):1789-1800, 2013

JCR Impact Factor: 2.800 (2013) -- Best Category: 11/67 orthopedics -- Quartile: 1

Papers in Conference Proceedings

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Comparison of manual and computerized measurements of sagittal vertebral inclination in MR images

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), 100-110, 2013

Papers in Conference Proceedings

Darko Štern, Vesna Njagulj, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Quantitative vertebral morphometry in 3D

SPIE Medical Imaging 2013: Image Processing, Feb 9-14, Lake Buena Vista, FL, USA (S. Ourselin, D. R. Haynor, Eds.), 8669:86690F, 2013

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), 1-12, 2013

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Statistical shape representation with landmark clustering by solving the assignment problem

SPIE Medical Imaging 2013: Image Processing, Feb 9-14, Lake Buena Vista, FL, USA (S. Ourselin, D. R. Haynor, Eds.), 8669:86690E, 2013

Abstracts in Conference Proceedings

Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Razgradnja medicinskih slik hrbtenice

8. strokovna konferenca o računalniški obdelavi slik in njeni uporabi v Sloveniji - ROSUS 2013, 21. marec, Maribor, Slovenija (B. Potočnik, ur.), 72-79, 2013

Papers in Journals

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

A game-theoretic framework for landmark-based image segmentation

IEEE Transactions on Medical Imaging, 31(9):1761-1776, 2012

JCR Impact Factor: 4.027 (2012) -- Best Category: 8/242 engineering, electrical & electronic -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Michiel M.A. Janssen, Boštjan Likar, René M. Castelein, Max A. Viergever, Franjo Pernuš

A review of methods for evaluating the quantitative parameters of sagittal pelvic alignment

The Spine Journal, 12(5):433-446, 2012

JCR Impact Factor: 3.355 (2012) -- Best Category: 3/63 orthopedics -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Michiel M. A. Janssen, Franjo Pernuš, René M. Castelein, Max A. Viergever

Analysis of pelvic incidence from three-dimensional images of a normal population

Spine, 37(8):E479-E485, 2012

JCR Impact Factor: 2.159 (2012) -- Best Category: 17/63 orthopedics -- Quartile: 2

Papers in Journals

Tomaž Vrtovec, Michiel M.A. Janssen, Franjo Pernuš, René M. Castelein, Max A. Viergever

Pelvic incidence: analysis in three dimensions

Journal of Bone and Joint Surgery, British Volume, 94-B(suppl. XLIV):107, 2012

JCR Impact Factor: 2.689 (2012) -- Best Category: 31/198 surgery -- Quartile: 1

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated measurement of anterior and posterior acetabular sector angles

SPIE Medical Imaging 2012: Computer-Aided Diagnosis, Feb 4-9, San Diego, CA, USA (B. van Ginneken, C. L. Novak, Eds.), 8315:83151U, 2012

Papers in Conference Proceedings

Darko Štern, Miran Bürmen, Vesna Njagulj, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automatic measurement of vertebral body deformations in CT images based on a 3D parametric model

SPIE Medical Imaging 2012: Computer-Aided Diagnosis, Feb 4-9, San Diego, CA, USA (B. van Ginneken, C. L. Novak, Eds.), 8315:831510, 2012

Papers in Conference Proceedings

Tomaž Vrtovec, Michiel M.A. Janssen, Franjo Pernuš, René M. Castelein, Max A. Viergever

Computerized analysis of pelvic incidence from 3D images

SPIE Medical Imaging 2012: Image Processing, Feb 4-9, San Diego, CA, USA (D. R. Haynor, S. Ourselin, Eds.), 8314:83142G, 2012

Abstracts in Conference Proceedings

Michiel M.A. Janssen, Koen L. Vincken, S.M. Van Raak, Tomaž Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels, René M. Castelein

EuroSpine 2012: Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls (O195)

European Spine Journal, 21(Suppl 3):S269-S337, 2012

JCR Impact Factor: 2.133 (2012) -- Best Category: 19/65 orthopedics -- Quartile: 2

Abstracts in Conference Proceedings

David Martinčič, Miha Brojan, Franc Kosel, Darko Štern, Tomaž Vrtovec, Rok Vengust

Optimal cement volume for vertebroplasty - biomechanical study

Annual Spine Experts Group Meeting & Slovenia 2012 Spine Symposium, Nov 29-30, Ljubljana, Slovenia, 28, 2012

Abstracts in Conference Proceedings

Michiel M.A. Janssen, Koen L. Vincken, Tomaž Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels, René M. Castelein

Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls

19th International Meeting on Advanced Spine Techniques - IMAST 2012, 18-21 Jul, Istanbul, Turkey, 463, 2012

Abstracts in Conference Proceedings

Michiel M.A. Janssen, Koen L. Vincken, S.M. Van Raak, Tomaž Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels, René M. Castelein

Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls

Studies in Health Technology and Informatics, 176:463, 2012

Abstracts in Conference Proceedings

Michiel M.A. Janssen, Koen L. Vincken, S.M. Van Raak, Tomaž Vrtovec, Bastiaan Kemp, Max A. Viergever, Lambertus W. Bartels, René M. Castelein

Sagittal spinal profile and spinopelvic balance in parents of scoliotic children, as compared to normal controls

SpineWeek 2012, May 28 - Jun 1, Amsterdam, the Netherlands, 2012

Abstracts in Conference Proceedings

Michiel M.A. Janssen, Tomaž Vrtovec, Franjo Pernuš, F. Cumhur Öner, Evie E. Vereecke, Anthony J. Channon, Max A. Viergever, Koen L. Vincken, René M. Castelein

The pelvic lordosis: an essential adaptation in human evolution, and a determinant of spinopelvic alignment

19th International Meeting on Advanced Spine Techniques - IMAST 2012, 18-21 Jul, Istanbul, Turkey, 462, 2012

Abstracts in Conference Proceedings

Michiel M.A. Janssen, Tomaž Vrtovec, Franjo Pernuš, F. Cumhur Öner, Evie E. Vereecke, Anthony J. Channon, Max A. Viergever, Koen L. Vincken, René M. Castelein

The pelvic lordosis: an essential adaptation in human evolution, and a determinant of spinopelvic alignment

Studies in Health Technology and Informatics, 176:462, 2012

Other Publications

Tomaž Vrtovec

Biomedical Informatics: Laboratory Practice

University of Ljubljana, Faculty of Electrical Engineering, Laboratory of Imaging Technologies, 2012

Other Publications

Tomaž Vrtovec

Biomedicinska informatika: laboratorijske vaje

Univerza v Ljubljani, Fakulteta za elektrotehniko, Laboratorij za slikovne tehnologije, 2012

Other Publications

Tomaž Vrtovec

Biomedicinska informatika: predavanja

Univerza v Ljubljani, Fakulteta za elektrotehniko, Laboratorij za slikovne tehnologije, 2012

Other Publications

Tomaž Vrtovec

Slikovna informatika: laboratorijske vaje

Univerza v Ljubljani, Fakulteta za elektrotehniko, Laboratorij za slikovne tehnologije, 2012

Papers in Journals

Peter Usenik, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Automated tracking and analysis of phospholipid vesicle contours in phase contrast microscopy images

Medical & Biological Engineering & Computing, 49(8):957-966, 2011

JCR Impact Factor: 1.878 (2011) -- Best Category: 25/99 computer science, interdisciplinary applications -- Quartile: 2

Papers in Journals

Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Manual and computerized measurement of sagittal vertebral inclination in computed tomography images

Spine, 36(13):E875-E881, 2011

JCR Impact Factor: 2.078 (2011) -- Best Category: 20/63 orthopedics -- Quartile: 2

Papers in Journals

Darko Štern, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Parametric modelling and segmentation of vertebral bodies in 3D CT and MR spine images

Physics in Medicine and Biology, 56(23):7505-7522, 2011

JCR Impact Factor: 2.829 (2011) -- Best Category: 14/72 engineering, biomedical -- Quartile: 1

Papers in Conference Proceedings

Peter Usenik, Miran Bürmen, Tomaž Vrtovec, Aleš Fidler, Franjo Pernuš, Boštjan Likar

Automated classification and visualization of healthy and pathological dental tissues based on near-infrared hyper-spectral imaging

SPIE Medical Imaging 2011: Computer-Aided Diagnosis, Feb 12-17, Lake Buena Vista, FL, USA (R. M. Summers, B. van Ginneken, Eds.), 7963:796340, 2011

Papers in Conference Proceedings

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Determination of vertebral pose in 3D by minimization of vertebral asymmetry

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:79620F, 2011

Papers in Conference Proceedings

Bulat Ibragimov, Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Segmentation of lung fields by game theory and dynamic programming

4th International Workshop on Pulmonary Image Analysis - PIA 2011, 18 Sep, Toronto, ON, Canada, 101-111, 2011

Papers in Conference Proceedings

Darko Štern, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Segmentation of vertebral bodies in CT and MR images based on 3D deterministic models

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:79620D, 2011

Abstracts in Conference Proceedings

Tomaž Vrtovec, Michiel M.A. Janssen, Franjo Pernuš, René M. Castelein, Max A. Viergever

Pelvic incidence: analysis in three dimensions

11th Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery - CAOS 2011, Jun 15-18, London, UK (J. P. Cobb, Ed.), 2011

Books and Book Chapters

Tomaž Vrtovec

Teorija linearnih sistemov: izpitne naloge z rešitvami

Založba FE in FRI, 2011

Doctoral Disssertations

Tomaž Vrtovec

Evaluation of spinal and pelvic parameters from three-dimensional medical images

PhD thesis: Utrecht University, Faculty of Medicine, the Netherlands (M. A. Viergever, F. Pernuš, R. M. Castelein), 2011

Papers in Journals

Tomaž Vrtovec, Rok Vengust, Boštjan Likar, Franjo Pernuš

Analysis of four manual and a computerized method for measuring axial vertebral rotation in computed tomography images

Spine, 35(12):E535-E541, 2010

JCR Impact Factor: 2.510 (2010) -- Best Category: 10/61 orthopedics -- Quartile: 1

Papers in Journals

Darko Štern, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated detection of spinal centrelines, vertebral bodies and intervertebral discs in CT and MR images of lumbar spine

Physics in Medicine and Biology, 55(1):247-264, 2010

JCR Impact Factor: 3.056 (2010) -- Best Category: 11/69 engineering, biomedical -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Determination of axial vertebral rotation in MR images: comparison of four manual and a computerized method

European Spine Journal, 19(5):774-781, 2010

JCR Impact Factor: 1.994 (2010) -- Best Category: 20/61 orthopedics -- Quartile: 2

Papers in Conference Proceedings

Darko Štern, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Automated determination of the centers of vertebral bodies and intervertebral discs in CT and MR lumbar spine images

SPIE Medical Imaging 2010: Image Processing, Feb 13-18, San Diego, CA, USA (B. M. Dawant, D. R. Haynor, Eds.), 7623:762350, 2010

Papers in Conference Proceedings

Peter Usenik, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Automated tracking of vesicles in phase contrast microscopy images

20th IAPR International Conference on Pattern Recognition - ICPR 2010, Aug 23-26, Istanbul, Turkey, 2520-2523, 2010

Papers in Conference Proceedings

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Evaluation of manual and computerized methods for the determination of axial vertebral rotation

SPIE Medical Imaging 2010: Image Processing, Feb 13-18, San Diego, CA, USA (B. M. Dawant, D. R. Haynor. Eds.), 7623:76234W, 2010

Papers in Conference Proceedings

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Evaluation of sagittal vertebral rotation in CT images by manual and automated methods

7th IEEE Symposium on Biomedical Imaging - ISBI 2010, Apr 14-17, Rotterdam, the Netherlands, 412-415, 2010

Papers in Conference Proceedings

Darko Štern, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebral bodies in MR images based on geometrical models in 3D

5th International Workshop on Medical Imaging and Augmented Reality - MIAR 2010, Sep 19-20, Beijing, China (H. Liao et al., Eds.), Lecture Notes in Computer Science 6326:419-428, 2010

Abstracts in Conference Proceedings

Peter Usenik, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Sledenje oblik fosfolipidnih veziklov zajetih s fazno kontrastno mikroskopijo

5. strokovna konferenca o računalniški obdelavi slik in njeni uporabi v Sloveniji - ROSUS 2010, 18. marec, Maribor, Slovenija (B. Potočnik, ur.), 94-100, 2010

Abstracts in Conference Proceedings

Tomaž Vrtovec, Rok Vengust, Boštjan Likar, Franjo Pernuš

Symmetry of vertebral structures: can it be used to measure axial vertebral rotation?

Slovenia 2010 Spine Symposium, Apr 9-10, Ljubljana, Slovenia, 73, 2010

Other Publications

Tomaž Vrtovec

Medical Informatics and Diagnostics: Laboratory Practice

University of Ljubljana, Faculty of Electrical Engineering, Laboratory of Imaging Technologies, 2010

Other Publications

Tomaž Vrtovec

Medicinska informatika in diagnostika: laboratorijske vaje

Univerza v Ljubljani, Fakulteta za elektrotehniko, Laboratorij za slikovne tehnologije, 2010

Papers in Journals

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

A review of methods for quantitative evaluation of axial vertebral rotation

European Spine Journal, 18(8):1079-1090, 2009

JCR Impact Factor: 1.956 (2009) -- Best Category: 14/56 orthopedics -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

A review of methods for quantitative evaluation of spinal curvature

European Spine Journal, 18(5):593-607, 2009

JCR Impact Factor: 1.956 (2009) -- Best Category: 14/56 orthopedics -- Quartile: 1

Papers in Conference Proceedings

Darko Štern, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Automated determination of spinal centerline in CT and MR images

SPIE Medical Imaging 2009: Image Processing, Feb 7-12, Lake Buena Vista, FL, USA (J. P. W. Pluim, B. M. Dawant, Eds.), 7259:72594M, 2009

Papers in Journals

Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Quantitative analysis of spinal curvature in 3D: application to CT images of normal spine

Physics in Medicine and Biology, 53(7):1895-1908, 2008

JCR Impact Factor: 2.784 (2008) -- Best Category: 10/51 engineering, biomedical -- Quartile: 1

Papers in Conference Proceedings

Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

A symmetry-based method for the determination of vertebral rotation in 3D

11th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, Sep 6-10, New York, USA (D. Metaxas et al., Eds.), Lecture Notes in Computer Science 5241:942-950, 2008

Papers in Conference Proceedings

Tomaž Vrtovec

Modality-independent determination of vertebral position and rotation in 3D

4th International Workshop on Medical Imaging and Augmented Reality - MIAR 2008, Aug 1-2, Tokyo, Japan (T. Dohi, I. Sakuma, H. Liao, Eds.), Lecture Notes in Computer Science 5128:89-97, 2008

Papers in Journals

Tomaž Vrtovec, Sébastien Ourselin, Lavier Gomes, Boštjan Likar, Franjo Pernuš

Automated generation of curved planar reformations from MR images of the spine

Physics in Medicine and Biology, 52(10):2865-2878, 2007

JCR Impact Factor: 2.528 (2007) -- Best Category: 9/44 engineering, biomedical -- Quartile: 1

Papers in Conference Proceedings

Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Determination of 3D location and rotation of lumbar vertebrae in CT images by symmetry-based auto-registration

SPIE Medical Imaging 2007: Image Processing, Feb 17-22, San Diego, CA, USA (J. P. W. Pluim, J. M. Reinhardt, Eds.), 6512:65121Q, 2007

Books and Book Chapters

Tomaž Vrtovec, Boštjan Likar

Teorija linearnih sistemov: rešeni primeri in vaje

Založba FE in FRI, 2007

Doctoral Disssertations

Tomaž Vrtovec

Automatic analysis of three-dimensional spine images

PhD thesis: University of Ljubljana, Faculty of Electrical Engineering, Slovenia (F. Pernuš), 2007

Papers in Conference Proceedings

Tomaž Vrtovec, Sébastien Ourselin, Lavier Gomes, Boštjan Likar, Franjo Pernuš

Generation of curved planar reformations from magnetic resonance images of the spine

9th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2006, Oct 1-6, Copenhagen, Denmark (R. Larsen, M. Nielsen, J. Sporring, Eds.), Lecture Notes in Computer Science 4191:135-143, 2006

Papers in Journals

Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Automated curved planar reformation of 3D spine images

Physics in Medicine and Biology, 50(19):4527-4540, 2005

JCR Impact Factor: 2.683 (2005) -- Best Category: 6/41 engineering, biomedical -- Quartile: 1

Papers in Journals

Tomaž Vrtovec

Curved planar reformation of CT spine images

Elektrotehniški vestnik - Electrotechnical Review, 72:285-290, 2005

Papers in Conference Proceedings

Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Curved planar reformation of CT spine data

SPIE Medical Imaging 2005: Image Processing, Feb 13-17, San Diego, CA, USA (J. M. Fitzpatrick, J. M. Reinhardt, Eds.), 5747:1446-1456, 2005

Papers in Conference Proceedings

Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Spine-based coordinate system

27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC '05, Sep 1-4, Shanghai, China, 5120-5123, 2005

Papers in Journals

Tomaž Vrtovec, Dejan Tomaževič, Boštjan Likar, Ludvik Travnik, Franjo Pernuš

Automated construction of 3D statistical shape models

Image Analysis & Stereology, 23(2):111-120, 2004

Papers in Conference Proceedings

Tomaž Vrtovec, Boštjan Likar, Dejan Tomaževič, Franjo Pernuš

Automated robust generation of compact 3D statistical shape models

SPIE Medical Imaging 2004: Image Processing, Feb 16-19, San Diego, CA, USA (J. M. Fitzpatrick, M. Sonka, Eds.), 5370:1312-1323, 2004

Papers in Conference Proceedings

Tomaž Vrtovec, Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Statistical shape deformable model of a lumbar vertebra

8th Computer Vision Winter Workshop - CVWW 2003, Feb 3-6, Valtice, Czech Republic (O. Drbohlav, Ed.), 91-96, 2003

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