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Domen Ocepek, Gašper Podobnik, Bulat Ibragimov, Tomaž Vrtovec

Deep implicit statistical shape models for 3D lumbar vertebrae image delineation

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292638, 2024

• doi:10.1117/12.3007664
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Luka Škrlj, Matija Jelenc, Tomaž Vrtovec

Deep learning-based landmark localization in 3D CT images of the heart: method and dataset comparison

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:129260F, 2024

• doi:10.1117/12.3006326
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June H. Choi, Žiga Bizjak, Wonhyoung Park, Jannik Sobisch, Žiga Špiclin

Deep shape based intracranial aneurysm rupture prediction

SPIE Medical Imaging 2024: Computer-Aided Diagnosis, Feb 18-22, San Diego, CA, USA (W. Chen, S.M. Astley, Eds.), 12927:129272I, 2024

• doi:10.1117/12.3007178
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Peter Naglič, Zuhail P. Kottoli, Matjaž Humar

Digital holography with embedded microlasers: a preliminary study

SPIE Photonics West 2024: Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XXII, Jan 27-Feb 1, San Francisco, CA, USA (A. Tarnok, J.P. Houston, Eds.), 12846:1284609, 2024

• doi:10.1117/12.3001423
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Peter Naglič, Ernesto Pini, Lorenzo Pattelli, Miran Bürmen

Massively parallel Monte Carlo simulations of light propagation in anisotropic scattering media by open-source PyXOpto engine

SPIE Photonics West 2024: Biomedical Applications of Light Scattering XIV, Jan 27-Feb 1, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 12856:1285608, 2024

• doi:10.1117/12.3001838
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Kamil Ibragimov, Gašper Podobnik, Teodor Trojner, Gregor Rečnik, Tomaž Vrtovec

Mid-sagittal cross-section identification for vertebra landmarking in MR spine images

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292637, 2024

• doi:10.1117/12.3007593
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Ana Marin, Peter Naglič, Miran Bürmen

Open-source protocol for preparation of turbid phantoms with microsphere suspensions

SPIE Photonics West 2024: Design and Quality for Biomedical Technologies XVII, Jan 27-Feb 1, San Francisco, CA, USA (G. Vargas, Ed.), 12833:1283305, 2024

• doi:10.1117/12.3001626
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Ernesto Pini, Peter Naglič, Miran Bürmen, Alexander Gatto, Henrik Schäfer, Diederik Wiersma, Lorenzo Pattelli

Time-resolved light transport in structurally anisotropic media

SPIE Photonics West 2024: Biomedical Applications of Light Scattering XIV, Jan 27-Feb 1, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 12856:1285606, 2024

• doi:10.1117/12.3002766
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Luka Škrlj, Matija Jelenc, Tomaž Vrtovec

Detection of aortic cusp landmarks in computed tomography images with deep learning

12th International Conference on Functional Imaging and Modeling of the Heart - FIMH 2023, Jun 19-22, Lyon, France (O. Bernard et al., Eds.), Lecture Notes in Computer Science 13958:301-309, 2023

• doi:10.1007/978-3-031-35302-4_31
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Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Multimodal CT and MR segmentation of head and neck organs-at-risk

26th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, Oct 8-12, Vancouver, Canada, Lecture Notes in Computer Science 14223:745-755, 2023

• doi:10.1007/978-3-031-43901-8_71
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Lara Dular, Gregor Brecl-Jakob, Lina Savšek, Jožef Magdič, Žiga Špiclin

Predicting future multiple sclerosis disease progression from MR scans

SPIE Medical Imaging 2023: Image Processing, Feb 19-23, San Diego, CA, USA (I. Išgum, O. Colliot, Eds.), 12465:124652U, 2023

• doi:10.1117/12.2654416
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Luka Škrlj, Matija Jelenc, Franjo Pernuš, Tomaž Vrtovec

Zaznavanje oslonilnih točk aortne zaklopke v CT slikah s postopkom globokega učenja

17. strokovna konferenca o računalniški obdelavi slik in njeni uporabi v Sloveniji - ROSUS 2023, 20. marec, Maribor, Slovenija (B. Potočnik, ur.), 61-68, 2023

• doi:10.18690/um.feri.4.2023.6
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Žan Cimperman, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Autofocus algorithms for lensless on-chip microscopy validated on synthetic targets for microfluidic applications and particle tracking

SPIE Photonics Europe 2022: Unconventional Optical Imaging III, Apr 3-7, Strasbourg, France (M. P. Georges, G. Popescu, N. Verrier, Eds.), 12136:1213617, 2022

• doi:10.1117/12.2621693
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Jannik Sobisch, Žiga Bizjak, Aichi Chien, Žiga Špiclin

Automated intracranial vessel labeling with learning boosted by vessel connectivity, radii and spatial context

1st International Workshop on Geometric Deep Learning in Medical Image Analysis - GeoMedIA 2022, Nov 18, Amsterdam, the Netherlands, Proceedings of Machine Learning Research 194:34-44, 2022

• https://proceedings.mlr.press/v194/sobisch22a.html
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Žiga Bizjak, June Ho Choi, Wonhyoung Park, Žiga Špiclin

Deep learning based modality-independent intracranial aneurysm detection

25th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, Sep 18-22, Singapore (L. Wang et al., Eds.), Lecture Notes in Computer Science 13433:760-769, 2022

• doi:10.1007/978-3-031-16437-8_73
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Lara Dular, Žiga Špiclin

Mixup augmentation improves age prediction from T1-weighted brain MRI scans

5th International Workshop on Predictive Intelligence in Medicine - MICCAI-PRIME 2022, Sep 20, Singapore (I. Rekik et al., Eds.), Lecture Notes in Computer Science 13564:60-70, 2022

• doi:10.1007/978-3-031-16919-9_6
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Martin Žukovec, Lara Dular, Žiga Špiclin

Modeling multi-annotator uncertainty as multi-class segmentation problem

7th BrainLes International Workshop, held in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2021, Sep 27, Strasbourg, France (A. Crimi, S. Bakas, Eds.), Lecture Notes in Computer Science 12962:112-123, 2022

• doi:10.1007/978-3-031-08999-2_9
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Žiga Bizjak, Aichi Chien, Iza Burnik, Žiga Špiclin

Novel dataset and evaluation of state-of-the-art vessel segmentation methods

SPIE Medical Imaging 2022: Image Processing, Feb 20-24, San Diego, CA, USA (I. Išgum, O. Colliot, Eds.), 12032:120322X, 2022

• doi:10.1117/12.2611756
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Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Parotid gland segmentation with nnU-Net: deployment scenario and inter-observer variability analysis

SPIE Medical Imaging 2022: Image Processing, Feb 20-24, San Diego, CA, USA (I. Išgum, O. Colliot, Eds.), 12032:120321N, 2022

• doi:10.1117/12.2609406
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Gašper Podobnik, Bulat Ibragimov, Primož Strojan, Primož Peterlin, Tomaž Vrtovec

Segmentation of organs-at-risk from CT and MR images of the head and neck: baseline results

19th IEEE Symposium on Biomedical Imaging - ISBI 2022, Mar 28-31, Kolkata India, 2022

• doi:10.1109/ISBI52829.2022.9761433
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Miran Bürmen, Peter Naglič, Janis Spigulis

Comparison of in-vivo measured optical path length distribution of backscattered light in human skin and time-resolved Monte Carlo simulations

SPIE European Conference on Biomedical Optics 2021: Diffuse Optical Spectroscopy and Imaging VIII, Jun 20-24, Munich, Germany (D. Contini, Y. Hoshi, T. D. O'Sullivan, Eds.), 11920:119201V, 2021

• doi:10.1117/12.2615424
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Yevhen Zelinskyi, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Efficient Monte Carlo simulations of subdiffusive reflectance for spatial frequency domain imaging systems with a low NA

SPIE European Conference on Biomedical Optics 2021: Diffuse Optical Spectroscopy and Imaging VIII, Jun 20-24, Munich, Germany (D. Contini, Y. Hoshi, T. D. O'Sullivan, Eds.), 11920:119201U, 2021

• doi:10.1117/12.2615422
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Lara Dular, Žiga Špiclin

Improving across dataset brain age predictions using transfer learning

4th International Workshop on Predictive Intelligence in Medicine - MICCAI-PRIME 2021, Oct 1, Strasbourg, France (I. Rekik et al., Eds.), Lecture Notes in Computer Science 12928:243-254, 2021

• doi:10.1007/978-3-030-87602-9_23
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Žiga Bizjak, Boštjan Likar, Franjo Pernuš, Žiga Špiclin

Modality agnostic intracranial aneurysm detection through supervised vascular surface classification

SPIE Medical Imaging 2021: Computer-Aided Diagnosis, Feb 15-20 (A. M. Mazurowski, K. Drukker, Eds.), 11597:115970O, 2021

• doi:10.1117/12.2580868
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Bekkouch Imad Eddine Ibrahim, Tamerlan Aidinovich, Tomaž Vrtovec, Ramil Kuleev, Bulat Ibragimov

Multi-agent shape models for hip landmark detection in MR scans

SPIE Medical Imaging 2021: Image Processing, Feb 15-20, San Diego, CA, USA (I. Išgum, B. A. Landman, Eds.), 11596:115960O, 2021

• doi:10.1117/12.2580862
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Peter Naglič, Yevhen Zelinskyi, Franjo Pernuš, Boštjan Likar, Miran Bürmen

pyxopto: an open-source Python library with utilities for fast light propagation modeling in turbid media

SPIE European Conference on Biomedical Optics 2021: Diffuse Optical Spectroscopy and Imaging VIII, Jun 20-24, Munich, Germany (D. Contini, Y. Hoshi, T. D. O'Sullivan, Eds.), 11920:1192012, 2021

• doi:10.1117/12.2615340
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Žiga Bizjak, Boštjan Likar, Franjo Pernuš, Žiga Špiclin

Vascular surface segmentation for intracranial aneurysm isolation and quantification

23rd International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, Oct 4-8, Lima, Peru (A. L. Martel et al., Eds.), Lecture Notes in Computer Science 12266:128-137, 2020

• doi:10.1007/978-3-030-59725-2_13
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Gregor Podrekar, Domen Kitak, Andraž Mehle, Domen Rački, Rok Dreu, Dejan Tomaževič

3D orientation estimation of pharmaceutical minitablets with convolutional neural network

15th International Work-Conference on Artificial Neural Networks - IWANN 2019: Advances in Computational Intelligence, Jun 12-14, Gran Canaria, Spain (I. Rojas et al., Eds.), Lecture Notes in Computer Science 11507:208-219, 2019

• doi:10.1007/978-3-030-20518-8_18
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Robert Korez, Michael Putzier, Tomaž Vrtovec

Automated measurement of pelvic incidence from X-ray images

6th International Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MSKI 2018, held in conjunction with the 21th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, Lecture Notes in Computer Science 11404:146-152, 2019

• doi:10.1007/978-3-030-11166-3_13
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Žiga Bizjak, Tim Jerman, Boštjan Likar, Franjo Pernuš, Aichi Chien, Žiga Špiclin

Registration based detection and quantification of intracranial aneurysm growth

SPIE Medical Imaging 2019: Computer-Aided Diagnosis, Feb 16-21, San Diego, CA, USA (K. Mori, H. K. Hahn, Eds.), 10950:1095007, 2019

• doi:10.1117/12.2512781
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Uroš Petković, Robert Korez, Stefan Parent, Samuel Kadoury, Tomaž Vrtovec

3D Cobb angle measurements from scoliotic mesh models with varying face-vertex density

5th Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), Lecture Notes in Computer Science 10734:48-58, 2018

• doi:10.1007/978-3-319-74113-0_5
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Domen Rački, Dejan Tomaževič, Danijel Skočaj

A compact convolutional neural network for textured surface anomaly detection

18th IEEE Winter Conference on Applications of Computer Vision - WACV 2018, Mar 12-15, Lake Tahoe, NV, USA (A. Hoogs, S. McCloskey, G. Medioni, Eds.), 1331-1339, 2018

• doi:10.1109/WACV.2018.00150
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Myra Cheng, Alfiia Galimzianova, Žiga Lesjak, Žiga Špiclin, Christopher B. Lock, Daniel L. Rubin

A multi-scale multiple sclerosis lesion change detection in a multi-sequence MRI

4th International Workshop on Deep Learning in Medical Image Analysis - DLMIA 2018 & 8th International Workshop on Multimodal Learning for Clinical Decision Support - ML-CDS 2018, held in conjunction with the 21th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, Sep 20, Granada, Spain (D. Stoyanov et al., Eds.), Lecture Notes in Computer Science 11045:353-360, 2018

• doi:10.1007/978-3-030-00889-5_40
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Dejan Knez, Imad S. Nahle, Tomaž Vrtovec, Stefan Parent, Samuel Kadoury

Computer-assisted pedicle screw placement planning: towards clinical practice

15th IEEE International Symposium on Biomedical Imaging - ISBI 2018, Apr 4-7, Washington, DC, USA (A. Amini, S. Acton, Eds.), 249-252, 2018

• doi:10.1109/ISBI.2018.8363566
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Domen Ravnik, Tim Jerman, Franjo Pernuš, Boštjan Likar, Žiga Špiclin

Dataset variability leverages white-matter lesion segmentation performance with convolutional neural network

SPIE Medical Imaging 2018: Image Processing, Feb 10-15, Houston, TX, USA (E. D. Angelini, B. A. Landman, Eds.), 10574:105741J, 2018

• doi:10.1117/12.2293702
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Peter Naglič, Matic Ivančič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Portable measurement system for real-time acquisition and analysis of in-vivo spatially resolved reflectance in the subdiffusive regime

SPIE Photonics West 2018: BiOS - Design and Quality for Biomedical Technologies XI, Jan 27 - Feb 1, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 10486:1048618, 2018

• doi:10.1117/12.2290460
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Hennadii Madan, Rok Berlot, Nicola J. Ray, Franjo Pernuš, Žiga Špiclin

Predicting nucleus basalis of Meynert volume from compartmental brain segmentations

1st International Workshop on Predictive Intelligence in Medical Imaging - PRIME 2018, held in conjunction with the 21th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, Sep 16, Granada, Spain (I. Rekik et al., Eds.), Lecture Notes in Computer Science 11121:68-75, 2018

• doi:10.1007/978-3-030-00320-3_9
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Peter Naglič, Matic Ivančič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Regression models for real-time estimation of optical and structural sample properties from subdiffusive spatially resolved reflectance

SPIE Photonics West 2018: BiOS - Optical Interactions with Tissue and Cells XXIX, Jan 27 - Feb 1, San Francisco, CA, USA (E. D. Jansen, H. T. Beier, Eds.), 10492:104920Q, 2018

• doi:10.1117/12.2291509
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Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of pathological spines in CT images using a two-way CNN and a collision-based model

5th International Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MSKI 2017, held in conjunction with the 20th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), Lecture Notes in Computer Science 10734:95-107, 2018

• doi:10.1007/978-3-319-74113-0_9
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William Mandel, Olivier Turcot, Dejan Knez, Stefan Parent, Samuel Kadoury

Spatiotemporal manifold prediction model for anterior vertebral body growth modulation surgery in idiopathic scoliosis

21st International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, Sep 16-20, Granada, Spain (A.F. Frangi et al., Eds.), Lecture Notes in Computer Science 11073:206-213, 2018

• doi:10.1007/978-3-030-00937-3_24
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Domen Rački, Dejan Tomaževič, Danijel Skočaj

The effect of different CNN configurations on textured-surface defect segmentation and detection performance

23rd Computer Vision Winter Workshop - CVWW 2018, Feb 5-7, Český Krumlov, Czech Republic (Z. Kukelova, J. Skovierova, Eds.), 89-96, 2018

• http://cmp.felk.cvut.cz/cvww2018/
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Uroš Petković, Robert Korez, Stefan Parent, Samuel Kadoury, Tomaž Vrtovec

3D Cobb angle measurements from scoliotic mesh models with varying face-vertex density

5th Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), 46-55, 2017

• https://mski2017.wordpress.com/
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Tim Jerman, Franjo Pernuš, Boštjan Likar, Žiga Špiclin

Aneurysm detection in 3D cerebral angiograms based on intra-vascular distance mapping and convolutional neural networks

14th IEEE International Symposium on Biomedical Imaging - ISBI 2017, Apr 18-21, Melbourne, Australia (G. Egan, O. Salvado, Eds.), 612-615, 2017

• doi:10.1109/ISBI.2017.7950595
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Hennadii Madan, Franjo Pernuš, Žiga Špiclin

Benchmarking quantitative imaging biomarker measurement methods without a gold standard

20th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, Sep 10-14, Québec City, Canada (M. Descoteaux et al., Eds.), Lecture Notes in Computer Science 10434:763-771, 2017

• doi:10.1007/978-3-319-66185-8_86
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Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Estimation of optical properties from subdiffusive reflectance beyond the second similarity parameter γ

SPIE European Conference on Biomedical Optics 2017: Diffuse Optical Spectroscopy and Imaging VI, Jun 25-29, Munich, Germany (H. Dehghani, H. Wabnitz, Eds.), 10412:1041205, 2017

• doi:10.1117/12.2286344
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Andraž Mehle, Boštjan Likar, Dejan Tomaževič

In-line recognition of agglomerated pharmaceutical pellets with density-based clustering and convolutional neural network

15th IAPR International Conference on Machine Vision Applications - MVA 2017, May 8-12, Nagoya, Japan, 9-12, 2017

• doi:10.23919/MVA.2017.7986760
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Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Intervertebral disc segmentation in MR images with 3D convolutional networks

SPIE Medical Imaging 2017: Image Processing, Feb 11-16, Orlando, FL, USA (M. A. Styner, E. D. Angelini, Eds.), 10133:1013306, 2017

• doi:10.1117/12.2254069
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Gregor Podrekar, Dejan Tomaževič, Boštjan Likar, Peter Usenik

Model based visual inspection of pharmaceutical tablets with photometric stereo

15th IAPR International Conference on Machine Vision Applications - MVA 2017, May 8-12, Nagoya, Japan, 133-136, 2017

• doi:10.23919/MVA.2017.7986819
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Hennadii Madan, Franjo Pernuš, Boštjan Likar, Žiga Špiclin

Regression without truth with Markov chain Monte-Carlo

SPIE Medical Imaging 2017: Image Perception, Observer Performance, and Technology Assessment, Feb 11-16, Orlando, FL, USA (M. A. Kupinski, R. M. Nishikawa, Eds.), 10136:101360K, 2017

• doi:10.1117/12.2255880
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Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of pathological spines in CT images using a two-way CNN and a collision-based model

5th Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging - MICCAI-MSKI 2017, Sep 10, Québec City, Canada (B. Glocker et al., Eds.), 91-103, 2017

• https://mski2017.wordpress.com/
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Uroš Petković, Robert Korez, Tomaž Vrtovec

Semi-automated measurement of the Cobb angle from 3D mesh models of the scoliotic spine

10th IEEE International Symposium on Image and Signal Processing and Analysis - ISPA 2017, Sep 18-20, Ljubljana, Slovenia, 137-140, 2017

• doi:10.1109/ISPA.2017.8073584
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Matic Ivančič, Peter Naglič, Boštjan Likar, Franjo Pernuš, Miran Bürmen

The role of numerical aperture in efficient estimation of spatially resolved reflectance by a Monte Carlo light propagation model

SPIE Photonics West 2017: Optical Interactions with Tissue and Cells XXVIII, Jan 28 - Feb 2, San Francisco, CA, USA (E. D. Jansen, H. T. Beier, Eds.), 10062:100621B, 2017

• doi:10.1117/12.2252541
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Domen Rački, Dejan Tomaževič, Danijel Skočaj

Towards surface anomaly detection with deep learning

26. mednarodna elektrotehniška in računalniška konferenca - 26th International Electrotechnical and Computer Science Conference - ERK 2017, Sep 21-23, Portorož, Slovenia, 437-440, 2017

• https://erk.fe.uni-lj.si/2017/
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Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Accurate landmark-based segmentation by incorporating landmark misdetections

13th IEEE International Symposium on Biomedical Imaging - ISBI 2016, Apr 12-16, Prague, Czech Republic (J. Kybic, M. Sonka, Eds.), 1072-1075, 2016

• doi:10.1109/ISBI.2016.7493451
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Jurij Jemec, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Along-track calibration of SWIR push-broom hyperspectral imaging system

SPIE Defense + Commercial Sensing 2016: Hyperspectral Imaging Sensors: Innovative Applications and Sensor Standards, Apr 17-21, Baltimore, MD, USA (D. P. Bannon, Ed.), 9860:98600H, 2016

• doi:10.1117/12.2223800
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Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated determination of pedicle morphometry in the thoracic spine

13th IEEE International Symposium on Biomedical Imaging - ISBI 2016, Apr 12-16, Prague, Czech Republic (J. Kybic, M. Sonka, Eds.), 664-667, 2016

• doi:10.1109/ISBI.2016.7493354
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Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated pedicle screw size and trajectory planning by maximization of fastening strength

3rd International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), Lecture Notes in Computer Science 9402:3-13, 2016

• doi:10.1007/978-3-319-41827-8_1
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Tim Jerman, Franjo Pernuš, Boštjan Likar, Žiga Špiclin, Aichi Chien

Automatic cutting plane identification for computer-aided analysis of intracranial aneurysms

23rd International Conference on Pattern Recognition - ICPR 2016, Dec 4-8, Cancun, Mexico, 1484-1489, 2016

• doi:10.1109/ICPR.2016.7899847
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Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Avtomatska metoda načrtovanja velikosti in trajektorije pedikularnih vijakov

11. strokovna konferenca o računalniški obdelavi slik in njeni uporabi v Sloveniji - ROSUS 2016, 17. marec, Maribor, Slovenija (B. Potočnik, ur.), 55-68, 2016

• https://cobsis.feri.um.si/rosus2016/
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William Mandel, Robert Korez, Marie-Lyne Nault, Stefan Parent, Samuel Kadoury

Classification of progressive and non-progressive scoliosis patients using discriminant manifolds

4th Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2016, Oct 17, Athens, Greece (J. Yao et al., Eds.), 98-108, 2016

• https://csi2016.wordpress.com/
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William Mandel, Robert Korez, Marie-Lyne Nault, Stefan Parent, Samuel Kadoury

Classification of progressive and non-progressive scoliosis patients using discriminant manifolds

4th International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2016, held in conjunction with the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Oct 17, Athens, Greece (J. Yao et al., Eds.), Lecture Notes in Computer Science 10182:135-145, 2016

• doi:10.1007/978-3-319-55050-3_13
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Tim Jerman, Alfiia Galimzianova, Franjo Pernuš, Boštjan Likar, Žiga Špiclin

Combining unsupervised and supervised methods for lesion segmentation

1st BrainLes International Workshop, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Oct 5, Munich, Germany, Lecture Notes in Computer Science 9556:45-56, 2016

• doi:10.1007/978-3-319-30858-6_5
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Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor

3rd International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), Lecture Notes in Computer Science 9402:117-124, 2016

• doi:10.1007/978-3-319-41827-8_11
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Matic Ivančič, Peter Naglič, Peter Usenik, Aleš Fidler, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Extraction of optical properties from hyperspectral images by Monte Carlo light propagation model

SPIE Photonics West 2016: Optical Interactions with Tissue and Cells XXVII, Tissue Optics and Optical Properties of Tissue III, Feb 13-18, San Francisco, CA, USA (E. D. Jansen, Ed.), 9706:97061A, 2016

• doi:10.1117/12.2212807
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Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Extraction of optical properties in the sub-diffuse regime by spatially resolved reflectance spectroscopy

SPIE Photonics West 2016: Optical Interactions with Tissue and Cells XXVII, Tissue Optics and Optical Properties of Tissue IV, Feb 13-18, San Francisco, CA, USA (E. D. Jansen, Ed.), 9706:97061C, 2016

• doi:10.1117/12.2212947
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Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Joint detection and segmentation of vertebral bodies in CT images by sparse representation error minimization

SPIE Medical Imaging 2016: Image Processing, Feb 27 - Mar 3, San Diego, CA, USA (M. A. Styner, E. D. Angelini, Eds.), 9784:97842Y, 2016

• doi:10.1117/12.2217087
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Žiga Špiclin

Kvantifikacija magnetnoresonančnih slik bolnikov z multiplo sklerozo [Quantification of magnetic resonance images of patients with multiple sclerosis]

3. srečanje z multiplo sklerozo, 2. december, Maribor, Slovenija (T. Hojs-Fabjan, S. Šega, ur.), Medicinski razgledi, 55(suppl. 5):5-9, 2016

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Dejan Knez, Janez Mohar, Robert J. Cirman, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Manual and computer-assisted pedicle screw placement plans: a quantitative comparison

4th Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2016, Oct 17, Athens, Greece (J. Yao et al., Eds.), 78-88, 2016

• https://csi2016.wordpress.com/
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Dejan Knez, Janez Mohar, Robert J. Cirman, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Manual and computer-assisted pedicle screw placement plans: a quantitative comparison

4th International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2016, held in conjunction with the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Oct 17, Athens, Greece (J. Yao et al., Eds.), Lecture Notes in Computer Science 10182:105-115, 2016

• doi:10.1007/978-3-319-55050-3_10
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Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Model-based segmentation of vertebral bodies from MR images with 3D CNNs

19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Oct 17-21, Athens, Greece (S. Ourselin et al., Eds.), Lecture Notes in Computer Science 9901:433-441, 2016

• doi:10.1007/978-3-319-46723-8_50
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Dejan Knez, Janez Mohar, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Quantitative comparison between the straight-forward and anatomical insertion technique for pedicle screw placement

SPIE Medical Imaging 2016: Image Processing, Feb 27 - Mar 3, San Diego, CA, USA (M. A. Styner, E. D. Angelini, Eds.), 9784:978439, 2016

• doi:10.1117/12.2216028
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Robert Korez, Benjamin Aubert, Thierry Cresson, Stefan Parent, Tomaž Vrtovec, Jacques de Guise, Samuel Kadoury

Sparse and multi-object pose+shape modeling of the three-dimensional scoliotic spine

13th IEEE International Symposium on Biomedical Imaging - ISBI 2016, Apr 12-16, Prague, Czech Republic (J. Kybic, M. Sonka, Eds.), 225-228, 2016

• doi:10.1109/ISBI.2016.7493250
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Maksimilijan Bregar, Blaž Cugmas, Franjo Pernuš, Boštjan Likar, Miran Bürmen

A study on the properties of contact pressure induced by manually operated diffuse reflectance fiber optic probes

SPIE Photonics West 2015: Biophotonics (BiOS), Optical Elastography and Tissue Biomechanics II, Feb 7-12, San Francisco, CA, USA (K. V. Larin, D. D. Sampson, Eds.), 9327:932717-1-6, 2015

• doi:10.1117/12.2077190
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Peter Naglič, Maksimilijan Bregar, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Accuracy of experimental data and Monte Carlo simulation lookup table-based inverse models for assessment of turbid media optical properties with diffuse reflectance spectroscopy

SPIE Photonics West 2015: Biophotonics (BiOS), Biomedical Applications of Light Scattering IX, Feb 7-12, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 9333:933310-1-9, 2015

• doi:10.1117/12.2078257
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Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:85-94, 2015

• doi:10.1007/978-3-319-14148-0_8
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Dejan Knez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated pedicle screw size and trajectory planning by maximization of fastening strength

3rd Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), 3-13, 2015

• https://csi2015.weebly.com/
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Gregor Podrekar, Blaž Bratanič, Boštjan Likar, Franjo Pernuš, Dejan Tomaževič

Automated visual inspection of pharmaceutical tablets in heavily cluttered dynamic environments

14th IAPR International Conference on Machine Vision Applications - MVA 2015, May 18-22, Tokyo, Japan, 206-209, 2015

• doi:10.1109/MVA.2015.7153168
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Tim Jerman, Franjo Pernuš, Boštjan Likar, Žiga Špiclin

Beyond Frangi: an improved multiscale vesselness filter

SPIE Medical Imaging 2015: Image Processing, Feb 21-26, Orlando, FL, USA (S. Ourselin, M. A. Styner, Eds.), 9413:94132A-1-11, 2015

• doi:10.1117/12.2081147
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Tim Jerman, Alfiia Galimzianova, Franjo Pernuš, Boštjan Likar, Žiga Špiclin

Combining unsupervised and supervised methods for lesion segmentation

1st Brain Lesions Workshop - MICCAI-Brainles 2015, Oct 5, Munich, Germany, 28-35, 2015

• COBISS-ID:11341140
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Tim Jerman, Franjo Pernuš, Boštjan Likar, Žiga Špiclin

Computer-aided detection and quantification of intracranial aneurysms

18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Oct 5-9, Munich, Germany (N. Navab et al., Eds.), Lecture Notes in Computer Science 9350:3-10, 2015

• doi:10.1007/978-3-319-24571-3_1
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Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor

3rd Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), 111-118, 2015

• https://csi2015.weebly.com/
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Hennadii Madan, Boštjan Likar, Franjo Pernuš, Žiga Špiclin

Device and methods for gold standard registration of clinical 3D and 2D cerebral angiograms

SPIE Medical Imaging 2015: Image-Guided Procedures, Feb 21-26, Orlando, FL, USA (Z. R. Yaniv, R. J. Webster III, Eds.), 9415:94151G-1-10, 2015

• doi:10.1117/12.2081908
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Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based detection of lumbar vertebrae in CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:73-84, 2015

• doi:10.1007/978-3-319-14148-0_7
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Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:235-240, 2015

• doi:10.1007/978-3-319-14148-0_21
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Alfiia Galimzianova, Žiga Lesjak, Boštjan Likar, Franjo Pernuš, Žiga Špiclin

Locally-adaptive MR intensity models and MRF-based segmentation of multiple sclerosis lesions

SPIE Medical Imaging 2015: Image Processing, Feb 21-26, Orlando, FL, USA (S. Ourselin, M. A. Styner, Eds.), 9413:94133G-1-9, 2015

• doi:10.1117/12.2081642
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Jurij Jemec, Franjo Pernuš, Boštjan Likar, Miran Bürmen

On the response function separability of hyperspectral imaging systems

SPIE Security + Defense 2015: Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XXI, Apr 20-24, Baltimore, MD, USA (M. Velez-Reyes, F. A. Kruse, Eds.), 9472:94721N, 2015

• doi:10.1117/12.2176981
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Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Optimal reinforcement of training dataset in supervised landmark-based segmentation

SPIE Medical Imaging 2015: Image Processing, Feb 21-26, Orlando, FL, USA (S. Ourselin, M. A. Styner, Eds.), 9413:94132K-1-6, 2015

• doi:10.1117/12.2082321
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Blaž Bratanič, Boštjan Likar, Franjo Pernuš, Dejan Tomaževič

Pose estimation of textureless objects in cluttered environments

14th IAPR International Conference on Machine Vision Applications - MVA 2015, May 18-22, Tokyo, Japan, 134-137, 2015

• doi:10.1109/MVA.2015.7153151
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Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 76-85, 2014

• http://csi-workshop.weebly.com
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Uroš Mitrović, Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Automatic detection of misalignment in rigid 3D-2D registration

2nd International Workshop on Clinical Image-Based Procedures: Translational Research in Medical Imaging - CLIP 2013, held in conjunction with the 16th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, Sep 22, Nagoya, Japan (M. Erdt et al., Eds.), Lecture Notes in Computer Science 8361:117-124, 2014

• doi:10.1007/978-3-319-05666-1_15
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Tim Jerman, Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Blob enhancement filter for computer-aided diagnosis of cerebral aneurysms

Joint MICCAI-Workshops on Computing and Visualization for Intravascular Imaging and Computer Assisted Stenting - MICCAI-CVII-STENT 2014, Sep 14, Boston, MA, USA (S.-L. Lee et al., Eds.), 14-21, 2014

• http://campar.in.tum.de/STENT2014/WebHome
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Jurij Jemec, Miran Bürmen, Franjo Pernuš, Boštjan Likar

Characterization and modeling of point spread function in push-broom hyperspectral imaging systems for spectral and spatial resolution enhancement

SPIE Photonics West 2014: Biophotonics (BiOS), Clinical Technologies and Systems, Design and Quality for Biomedical Technologies VI, Feb 1-6, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 8936:893616, 2014

• doi:10.1117/12.2040134
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Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Comparison of manual and computerized measurements of sagittal vertebral inclination in MR images

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2013, held in conjunctin with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 17:111-121, 2014

• doi:10.1007/978-3-319-07269-2_10
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Robert Korez, Darko Štern, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Determination of the intervertebral disc space from CT images of the lumbar spine

SPIE Medical Imaging 2014: Image Processing, Feb 15-20, San Diego, CA, USA (S. Ourselin, M. A. Styner, Eds.), 9034:90342Q, 2014

• doi:10.1117/12.2043734
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Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Fast and robust 3D to 2D image registration by backprojection of gradient covariances

6th International Workshop on Biomedical Image Registration - WBIR 2014, Jul 7-8, London, UK (S. Ourselin, M. Modat, Eds.), Lecture Notes in Computer Science 8545:124-133, 2014

• doi:10.1007/978-3-319-08554-8_13
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Ciril Bohak, Anže Sodja, Matija Marolt, Uroš Mitrović, Franjo Pernuš

Fast segmentation, conversion and rendering of volumetric data using GPU

International Conference on Systems, Signals and Image Processing - IWSSIP 2014, May 12-15, Dubrovnik, Croatia, 239-242, 2014

• https://www.vcl.fer.hr/iwssip2014/
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Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based detection of lumbar vertebrae in CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 65-75, 2014

• http://csi-workshop.weebly.com
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Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 208-213, 2014

• http://csi-workshop.weebly.com
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Andraž Mehle, Marko Bukovec, Franjo Pernuš, Boštjan Likar, Dejan Tomaževič

Print localization on transparent pharmaceutical capsules

19th Computer Vision Winter Workshop - CVWW 2014, Feb 3-5, Køtiny, Czech Republic (J. Heller, Z. Kukelova, Eds.), 75-80, 2014

• http://cmp.felk.cvut.cz/cvww2014/
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Alfiia Galimzianova, Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Robust mixture-parameter estimation for unsupervised segmentation of brain MR images

3rd International Workshop on Medical Computer Vision: Large Data in Medical Imaging - MCV 2013, held in conjunvtion with MICCAI 2013, Sep 26, Nagoya, Japan (B. Menze et al., Eds.), Lecture Notes in Computer Science 8331:84-94, 2014

• doi:10.1007/978-3-319-05530-5_9
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Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2013, held in conjunctin with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 17:3--14, 2014

• doi:10.1007/978-3-319-07269-2_1
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Žiga Lesjak, Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Validation and comparison of intensity based methods for change detection in serial brain images

SPIE Medical Imaging 2014: Image Perception, Observer Performance, and Technology Assessment, Feb 15-20, San Diego, CA, USA (C. R. Mello-Thoms, M. A. Kupinski, Eds.), 9037:90371C, 2014

• doi:10.1117/12.2043102
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Alfiia Galimzianova, Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Automated segmentation of MS lesions in brain MR images using localized trimmed-likelihood estimation

SPIE Medical Imaging 2013: Image Processing, Feb 9-14, Lake Buena Vista, FL, USA (S. Ourselin, D. R. Haynor, Eds.), 8669:86693E, 2013

• doi:10.1117/12.2006381
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Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Comparison of manual and computerized measurements of sagittal vertebral inclination in MR images

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), 100-110, 2013

• http://www.digitalimaginggroup.ca/members/Shuo/spine/MICCAIWorkshop.html
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Uroš Mitrović, Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Evaluation of 3D-2D registration methods for registration of 3D-DSA and 2D-DSA cerebral images

SPIE Medical Imaging 2013: Image Processing, Feb 9-14, Lake Buena Vista, FL, USA (S. Ourselin, D. R. Haynor, Eds.), 8669:866931, 2013

• doi:10.1117/12.2007009
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Maksimilijan Bregar, Miran Bürmen, Franjo Pernuš, Boštjan Likar

Influence of the training scheme on the soft tissue classification by near infrared pressure induced spectral response

Advances in Optics for Biotechnology, Medicine and Surgery XIII, Jun 2-5, Lake Tahoe, CA, USA, 2013

• COBISS-ID:10436180
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Uroš Mitrović, Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Method for 3D-2D registration of vascular images: application to 3D contrast agent flow visualization

1st International Workshop on Clinical Image-Based Procedures: from Planning to Intervention - CLIP 2012, held in conjunction with the 15th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, Oct 5, Nice, France (K. Drechsler et al., Eds.), Lecture Notes in Computer Science 7761:50-58, 2013

• doi:10.1007/978-3-642-38079-2_7
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Ciril Bohak, Simon Žagar, Anže Sodja, Peter Škrlj, Uroš Mitrović, Franjo Pernuš, Matija Marolt

Neck veins: an interactive 3D visualization of head veins

4th International Conference World Usability Day Slovenia 2013, Nov 25, Ljubljana, Slovenia (E. Stojmenova, Ed.), 64-66, 2013

• https://worldusabilityday.org/events/world-usability-day-slovenia-2013/
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Blaž Cugmas, Maksimilijan Bregar, Miran Bürmen, Franjo Pernuš, Boštjan Likar

Quantification of the probe contact pressure effects on the soft tissue classification in in vivo near infrared spectroscopy

16th International Conference on Near Infrared Spectroscopy - NIR 2013, Jun 2-7, La Grande-Motte, France, 2013

• COBISS-ID:10909268
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Darko Štern, Vesna Njagulj, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Quantitative vertebral morphometry in 3D

SPIE Medical Imaging 2013: Image Processing, Feb 9-14, Lake Buena Vista, FL, USA (S. Ourselin, D. R. Haynor, Eds.), 8669:86690F, 2013

• doi:10.1117/12.2003646
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Blaž Bratanič, Boštjan Likar, Franjo Pernuš, Dejan Tomaževič

Real-time in-plane rotation estimation of pharmaceutical tablets: a feature based approach

13th IAPR International Conference on Machine Vision Applications - MVA 2013, May 20-23, Kyoto, Japan, 423-426, 2013

• http://www.mva-org.jp/mva2013/
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Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), 1-12, 2013

• http://www.digitalimaginggroup.ca/members/Shuo/spine/MICCAIWorkshop.html
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Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Statistical shape representation with landmark clustering by solving the assignment problem

SPIE Medical Imaging 2013: Image Processing, Feb 9-14, Lake Buena Vista, FL, USA (S. Ourselin, D. R. Haynor, Eds.), 8669:86690E, 2013

• doi:10.1117/12.2006176
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Uroš Mitrović, Žiga Špiclin, Darko Štern, Primož Markelj, Boštjan Likar, Zoran Milošević, Franjo Pernuš

3D-2D registration of cerebral angiograms based on vessel directions and intensity gradients

SPIE Medical Imaging 2012: Image Processing, Feb 4-9, San Diego, CA, USA (D. R. Haynor, S. Ourselin, Eds.), 8314:83141T, 2012

• doi:10.1117/12.910904
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Blaž Cugmas, Franjo Pernuš, Boštjan Likar

Analysis of soft tissue near-infrared spectra under dynamic pressure effects

SPIE Photonics West 2012: Clinical Technologies and Systems, Optical Biopsy X, Jan 21-26, San Francisco, CA, USA (R. R. Alfano, S. G. Demos, Eds.), 8220:822007, 2012

• doi:10.1117/12.908614
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Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated measurement of anterior and posterior acetabular sector angles

SPIE Medical Imaging 2012: Computer-Aided Diagnosis, Feb 4-9, San Diego, CA, USA (B. van Ginneken, C. L. Novak, Eds.), 8315:83151U, 2012

• doi:10.1117/12.910873
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Matjaž Kosec, Miran Bürmen, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

Automated model-based calibration of imaging spectrographs

SPIE Photonics West 2012: Clinical Technologies and Systems, Design and Quality for Biomedical Technologies V, Jan 21-26, San Francisco, CA, USA (R. Raghavachari, R. Liang, J. Pfefer, Eds.), 8215:82150A, 2012

• doi:10.1117/12.907780
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Darko Štern, Miran Bürmen, Vesna Njagulj, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automatic measurement of vertebral body deformations in CT images based on a 3D parametric model

SPIE Medical Imaging 2012: Computer-Aided Diagnosis, Feb 4-9, San Diego, CA, USA (B. van Ginneken, C. L. Novak, Eds.), 8315:831510, 2012

• doi:10.1117/12.911107
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Žiga Špiclin, Miran Bürmen, Franjo Pernuš, Boštjan Likar

Characterization and modeling of the spatially and spectrally varying point-spread function in hyperspectral imaging systems for computational correction of axial optical aberrations

SPIE Photonics West 2012: Clinical Technologies and Systems, Design and Quality for Biomedical Technologies V, Jan 21-26, San Francisco, CA, USA (R. Raghavachari, R. Liang, J. Pfefer, Eds.), 8215:82150R, 2012

• doi:10.1117/12.908619
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Tomaž Vrtovec, Michiel M.A. Janssen, Franjo Pernuš, René M. Castelein, Max A. Viergever

Computerized analysis of pelvic incidence from 3D images

SPIE Medical Imaging 2012: Image Processing, Feb 4-9, San Diego, CA, USA (D. R. Haynor, S. Ourselin, Eds.), 8314:83142G, 2012

• doi:10.1117/12.910912
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Peter Usenik, Miran Bürmen, Aleš Fidler, Franjo Pernuš, Boštjan Likar

Evaluation of cross-polarized near-infrared hyperspectral imaging for early detection of dental caries

SPIE Photonics West 2012: Photonic Therapeutics and Diagnostics, Lasers in Dentistry XVIII, Jan 21-26, San Francisco, CA, USA (P. Rechmann, D. Fried, Eds.), 8208:82080G, 2012

• doi:10.1117/12.908763
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Miran Bürmen, Aleš Fidler, Franjo Pernuš, Boštjan Likar

Hyperspectral laser-induced autofluorescence imaging of dental caries

SPIE Photonics West 2012: Photonic Therapeutics and Diagnostics, Lasers in Dentistry XVIII, Jan 21-26, San Francisco, CA, USA (P. Rechmann, D. Fried, Eds.), 8208:82080E, 2012

• doi:10.1117/12.908670
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Peter Usenik, Miran Bürmen, Aleš Fidler, Franjo Pernuš, Boštjan Likar

Improved classification and visualization of healthy and pathological hard dental tissues by modeling specular reflections in NIR hyperspectral images

SPIE Medical Imaging 2012: Computer-Aided Diagnosis, Feb 4-9, San Diego, CA, USA (B. van Ginneken, C. L. Novak, Eds.), 8315:83152N, 2012

• doi:10.1117/12.911623
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Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Quad-tree based entropy estimator for fast and robust brain image registration

5th International Workshop on Biomedical Image Registration - WBIR 2012, Jul 7-8, Nashville, TN, USA (B. M. Dawant et al., Eds.), Lecture Notes in Computer Science 7359:160-169, 2012

• doi:10.1007/978-3-642-31340-0_17
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Miran Bürmen, Peter Usenik, Aleš Fidler, Franjo Pernuš, Boštjan Likar

A construction of standardized near infrared hyper-spectral teeth database: a first step in the development of reliable diagnostic tool for quantification and early detection of caries

SPIE Photonics West 2011: Dental Hard Tissue and Early Caries Imaging II, Lasers in Dentistry XVII, Jan 22-27, San Francisco, CA, USA (P. Rechmann, D. Fried, Eds.), 7884:78840E, 2011

• doi:10.1117/12.875059
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Nika Oman, Miha Možina, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

A study of a visual inspection technique for in-process monitoring of coating of pharmaceutical pellets

IEEE International Conference on Industrial Technology - ICIT 2011, Mar 14-16, Auburn, AL, USA, 239-243, 2011

• doi:10.1109/ICIT.2011.5754380
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Peter Usenik, Miran Bürmen, Tomaž Vrtovec, Aleš Fidler, Franjo Pernuš, Boštjan Likar

Automated classification and visualization of healthy and pathological dental tissues based on near-infrared hyper-spectral imaging

SPIE Medical Imaging 2011: Computer-Aided Diagnosis, Feb 12-17, Lake Buena Vista, FL, USA (R. M. Summers, B. van Ginneken, Eds.), 7963:796340, 2011

• doi:10.1117/12.878264
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Bulat Ibragimov, Boštjan Likar, Franjo Pernuš

Boundary detection by linear programming with application to lung fields segmentation

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:796231, 2011

• doi:10.1117/12.877705
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Žiga Špiclin, Franjo Pernuš, Boštjan Likar

Correction of axial optical aberrations in hyper-spectral imaging systems

SPIE Photonics West 2011: Hyperspectral Imaging Systems, Design and Quality for Biomedical Technologies IV, Jan 22-27, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 7891:78910S, 2011

• doi:10.1117/12.873180
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Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Determination of vertebral pose in 3D by minimization of vertebral asymmetry

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:79620F, 2011

• doi:10.1117/12.877762
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Uroš Mitrović, Primož Markelj, Boštjan Likar, Zoran Milošević, Franjo Pernuš

Gradient-based 3D-2D registration of cerebral angiograms

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:79621P, 2011

• doi:10.1117/12.877541
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Žiga Špiclin, Peter Usenik, Miran Bürmen, Aleš Fidler, Franjo Pernuš, Boštjan Likar

Groupwise consistent image registration: crucial step for the construction of a standardized near infrared hyper-spectral teeth database

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:79622A, 2011

• doi:10.1117/12.877940
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Jaka Katrašnik, Franjo Pernuš, Boštjan Likar

Illumination system characterization for hyperspectral imaging

SPIE Photonics West 2011: Hyperspectral Imaging Systems, Design and Quality for Biomedical Technologies IV, Jan 22-27, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 7891:78910T, 2011

• doi:10.1117/12.873868
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Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Information-theoretic multi-modal image registration based on the improved fast Gauss transform: application to brain images

1st International Workshop on Multimodal Brain Image Analysis - MBIA 2011, held in conjunction with the 14th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2011, Sep 18, Toronto, ON, Canada (T. Liu et al., Eds.), Lecture Notes in Computer Science 7012:135-142, 2011

• doi:10.1007/978-3-642-24446-9_17
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Miha Možina, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

Modelling imprints of pharmaceutical tablets for imprint quality visual inspection

15th International Conference on Image Processing, Computer Vision, and Pattern Recognition - IPCV 2011, Jul 18-21, Las Vegas, NV, USA, 934-940, 2011

• COBISS-ID:8790612
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Miha Možina, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

Optical character verification of print on pharmaceutical capsules

12th IAPR International Conference on Machine Vision Applications - MVA 2011, Jun 13-15, Nara, Japan (K. Yamada, Ed.), 303-306, 2011

• http://www.mva-org.jp/mva2011/
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Bulat Ibragimov, Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Segmentation of lung fields by game theory and dynamic programming

4th International Workshop on Pulmonary Image Analysis - PIA 2011, 18 Sep, Toronto, ON, Canada, 101-111, 2011

• http://www.lungworkshop.org/2011/
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Darko Štern, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Segmentation of vertebral bodies in CT and MR images based on 3D deterministic models

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:79620D, 2011

• doi:10.1117/12.877365
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Supriyanto Pawiro, Primož Markelj, Christelle Gendrin, Michael Figl, Markus Stock, Christoph Bloch, Christoph Weber, Ewald Unger, Iris Nöbauer, Franz Kainberger, Helga Bergmeister, Dietmar Georg, Helmar Bergmann, Wolfgang Birkfellner

A new gold-standard dataset for 2D/3D image registration evaluation

SPIE Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, Feb 13-18, San Diego, CA, USA (K. H. Wong, M. I. Miga, Eds.), 7625:76251V, 2010

• doi:10.1117/12.844488
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Primož Markelj, Boštjan Likar, Franjo Pernuš

A new image database for 3D/2D registration based on the Visible Human data set

4th International Workshop on Biomedical Image Registration - WBIR 2010, Jul 11-13, Lübeck, Germany (B. Fischer, B. Dawant, C. Lorenz, Eds.), Lecture Notes in Computer Science 6204:151-160, 2010

• doi:10.1007/978-3-642-14366-3_14
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Miran Bürmen, Franjo Pernuš, Boštjan Likar

A practical approach to spectral calibration of short wavelength infrared hyper-spectral imaging systems

SPIE Photonics West 2010: Progress in Biomedical Optics and Imaging, Design and Quality for Biomedical Technologies III, Jan 23-28, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 7556:755614, 2010

• doi:10.1117/12.841866
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Darko Štern, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Automated determination of the centers of vertebral bodies and intervertebral discs in CT and MR lumbar spine images

SPIE Medical Imaging 2010: Image Processing, Feb 13-18, San Diego, CA, USA (B. M. Dawant, D. R. Haynor, Eds.), 7623:762350, 2010

• doi:10.1117/12.844567
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Peter Usenik, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Automated tracking of vesicles in phase contrast microscopy images

20th IAPR International Conference on Pattern Recognition - ICPR 2010, Aug 23-26, Istanbul, Turkey, 2520-2523, 2010

• doi:10.1109/ICPR.2010.617
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Miran Bürmen, Miha Možina, Franjo Pernuš, Boštjan Likar

Coating film thickness of pharmaceutical pellets measured by near infrared spectroscopy

IEEE International Conference on Industrial Technology - ICIT 2010, Mar 14-17, Viña del Mar, Chile, 199-204, 2010

• doi:10.1109/ICIT.2010.5472679
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Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Evaluation of manual and computerized methods for the determination of axial vertebral rotation

SPIE Medical Imaging 2010: Image Processing, Feb 13-18, San Diego, CA, USA (B. M. Dawant, D. R. Haynor. Eds.), 7623:76234W, 2010

• doi:10.1117/12.843528
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Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Evaluation of sagittal vertebral rotation in CT images by manual and automated methods

7th IEEE Symposium on Biomedical Imaging - ISBI 2010, Apr 14-17, Rotterdam, the Netherlands, 412-415, 2010

• doi:10.1109/ISBI.2010.5490323
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Žiga Špiclin, Jaka Katrašnik, Miran Bürmen, Franjo Pernuš, Boštjan Likar

Geometrical calibration of an AOTF hyper-spectral imaging system

SPIE Photonics West 2010: Progress in Biomedical Optics and Imaging, Design and Quality for Biomedical Technologies III, Jan 23-28, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 7556:75560I, 2010

• doi:10.1117/12.841727
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Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Real-time print localization on pharmaceutical capsules for automatic visual inspection

IEEE International Conference on Industrial Technology - ICIT 2010, Mar 14-17, Viña del Mar, Chile, 279-284, 2010

• doi:10.1109/ICIT.2010.5472693
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Darko Štern, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebral bodies in MR images based on geometrical models in 3D

5th International Workshop on Medical Imaging and Augmented Reality - MIAR 2010, Sep 19-20, Beijing, China (H. Liao et al., Eds.), Lecture Notes in Computer Science 6326:419-428, 2010

• doi:10.1007/978-3-642-15699-1_44
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Jaka Katrašnik, Franjo Pernuš, Boštjan Likar

Spectral characterization and calibration of AOTF spectrometers and hyper-spectral imaging system

SPIE Photonics West 2010: Progress in Biomedical Optics and Imaging, Design and Quality for Biomedical Technologies III, Jan 23-28, San Francisco, CA, USA (R. Raghavachari, R. Liang, Eds.), 7556:75560H, 2010

• doi:10.1117/12.840633
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Christelle Gendrin, Jakob Spörk, Christoph Bloch, Supriyanto Pawiro, Christoph Weber, Michael Figl, Primož Markelj, Franjo Pernuš, Dietmar Georg, Helmar Bergmann, Wolfgang Birkfellner

Towards real-time 2D/3D registration for organ motion monitoring in image-guided radiation therapy

SPIE Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, Feb 13-18, San Diego, CA, USA (K. H. Wong, M. I. Miga, Eds.), 7625:762512, 2010

• doi:10.1117/12.844201
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Miha Možina, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

Visual imaging as a process analytical technology tool for the understanding and on-line monitoring of pellet coating process

IEEE International Conference on Industrial Technology - ICIT 2010, Mar 14-17, Viña del Mar, Chile, 1088-1093, 2010

• doi:10.1109/ICIT.2010.5472576
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Primož Markelj, Franjo Pernuš, Boštjan Likar

A tool for registration verification based on gradient correspondence

SPIE Medical Imaging 2009: Image Processing, Feb 7-12, Lake Buena Vista, FL, USA (J. P. W. Pluim, B. M. Dawant, Eds.), 7259:725937, 2009

• doi:10.1117/12.812349
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Darko Štern, Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

Automated determination of spinal centerline in CT and MR images

SPIE Medical Imaging 2009: Image Processing, Feb 7-12, Lake Buena Vista, FL, USA (J. P. W. Pluim, B. M. Dawant, Eds.), 7259:72594M, 2009

• doi:10.1117/12.811150
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Miha Možina, Miran Bürmen, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

Automatic visual inspection of pharmaceutical pellets in coating process

IEEE International Conference on Industrial Technology - ICIT 2009, Feb 10-13, Churchill, VIC, Australia, 2009

• doi:10.1109/ICIT.2009.4939618
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Jaka Katrašnik, Miran Bürmen, Franjo Pernuš, Boštjan Likar

Contrast enhancement of subcutaneous blood vessel images by means of visible and near-infrared hyper-spectral imaging

SPIE Medical Imaging 2009: Image Processing, Feb 7-12, Lake Buena Vista, FL, USA (J. P. W. Pluim, B. M. Dawant, Eds.), 7259:725927, 2009

• doi:10.1117/12.812438
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Miran Bürmen, Franjo Pernuš, Boštjan Likar

High speed precision weighing of pharmaceutical capsules

IEEE International Conference on Industrial Technology - ICIT 2009, Feb 10-13, Churchill, VIC, Australia, 2009

• doi:10.1109/ICIT.2009.4939620
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Primož Markelj, Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Registration of 3D pre-interventional to 2D intra-interventional medical images

World Congress on Medical Physics and Biomedical Engineering 2009, Sep 7-12, Munich, Germany (O. Doessel, W. C. Schlegel, Eds.), IFMBE Proceedings 25/4:1924–1927, 2009

• doi:10.1007/978-3-642-03882-2
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Žiga Špiclin, Boštjan Likar, Franjo Pernuš

Registration of EEG electrode positions to PET and fMRI images

SPIE Medical Imaging 2009: Image Processing, Feb 7-12, Lake Buena Vista, FL, USA (J. P. W. Pluim, B. M. Dawant, Eds.), 7259:72592J, 2009

• doi:10.1117/12.811892
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Miran Bürmen, Franjo Pernuš, Boštjan Likar

Simulator for assessing the performance of polychromatic LED light sources

SPIE Photonics West 2009: Integrated Optoelectronic Devices (OPTO), Light-Emitting Diodes: Materials, Devices, and Applications for Solid State Lighting XIII, Jan 24-29, San Jose, CA, USA (K. P Streubel, H. Jeon, L.-W. Tu, Eds.), 7231:72311F, 2009

• doi:10.1117/12.810054
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Tomaž Vrtovec, Franjo Pernuš, Boštjan Likar

A symmetry-based method for the determination of vertebral rotation in 3D

11th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, Sep 6-10, New York, USA (D. Metaxas et al., Eds.), Lecture Notes in Computer Science 5241:942-950, 2008

• doi:10.1007/978-3-540-85988-8_112
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Žiga Špiclin, Arne Hans, Frank Duffy, Simon Warfield, Boštjan Likar, Franjo Pernuš

EEG to MRI registration based on global and local similarities of MRI intensity distributions

11th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, Sep 6-10, New York, USA (D. Metaxas et al., Eds.), Lecture Notes in Computer Science 5241:762-770, 2008

• doi:10.1007/978-3-540-85988-8_91
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Tomaž Vrtovec

Modality-independent determination of vertebral position and rotation in 3D

4th International Workshop on Medical Imaging and Augmented Reality - MIAR 2008, Aug 1-2, Tokyo, Japan (T. Dohi, I. Sakuma, H. Liao, Eds.), Lecture Notes in Computer Science 5128:89-97, 2008

• doi:10.1007/978-3-540-79982-5_10
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Jaka Katrašnik, Franjo Pernuš, Boštjan Likar

New robot for power line inspection

IEEE International Conference on Robotics, Automation and Mechatronics - RAM 2008, Sep 21-24, Chengdu, China, 1195-1200, 2008

• doi:10.1109/RAMECH.2008.4681335
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Primož Markelj, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

Robust 3D/2D registration of CT and MR to X-ray images based on gradient reconstruction

22nd International Congress and Exhibition on Computer Assisted Radiology and Surgery - CARS 2008, Jun 25-28, Barcelona, Spain (H. U. Lemke et al., Eds.), 3:S102, 2008

• https://www.cars-int.org/
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Miran Bürmen, Franjo Pernuš, Boštjan Likar

Smart LED light source driver for machine vision system

SPIE Photonics West 2008: Integrated Optoelectronic Devices (OPTO), Light-Emitting Diodes: Research, Manufacturing, and Applications XII, Jan 19-24, San Jose, CA, USA (K. P Streubel, H. J. Jeon, Eds.), 6910:69100U, 2008

• doi:10.1117/12.764630
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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

3D/2D image registration: The impact of X-ray views and their number

10th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2007, Oct 29 - Nov 2, Brisbane, QLD, Australia (N. Ayache, S. Ourselin, A. Maeder, Eds.), Lecture Notes in Computer Science 4791:450-457, 2007

• doi:10.1007/978-3-540-75757-3_55
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Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Determination of 3D location and rotation of lumbar vertebrae in CT images by symmetry-based auto-registration

SPIE Medical Imaging 2007: Image Processing, Feb 17-22, San Diego, CA, USA (J. P. W. Pluim, J. M. Reinhardt, Eds.), 6512:65121Q, 2007

• doi:10.1117/12.710580
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Marko Bukovec, Žiga Špiclin, Franjo Pernuš, Boštjan Likar

Geometrical and statistical visual inspection of imprinted tablets

10th IAPR International Conference on Machine Vision Applications - MVA 2007, May 16-18, Tokyo, Japan, 412-415, 2007

• COBISS-ID:5932372
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Žiga Špiclin, Marko Bukovec, Franjo Pernuš, Boštjan Likar

Matching images of imprinted tablets

12th IEEE International Conference on Emerging Technologies and Factory Automation - ETFA 2007, Sep 25-28, Patras, Greece, 916-919, 2007

JCR Impact Factor: 5.561 -- Best Category: 3/87 radiology, nuclear medicine & medical imaging -- Quartile: 1

• doi:10.1109/EFTA.2007.4416881
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Primož Markelj, Dejan Tomaževič, Franjo Pernuš, Boštjan Likar

Optimizing bone extraction in MR images for 3D/2D gradient based registration of MR and X-ray images

SPIE Medical Imaging 2007: Image Processing, Feb 17-22, San Diego, CA, USA (J. P. W. Pluim, J. M. Reinhardt, Eds.), 5612:651224-1, 2007

• doi:10.1117/12.709259
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Miran Bürmen, Franjo Pernuš, Boštjan Likar

Prediction of intensity and color degradation of LEDs

SPIE Photonics West 2007: Integrated Optoelectronic Devices (OPTO), Light-Emitting Diodes: Research, Manufacturing, and Applications XI, Jan 20-25, San Jose, CA, USA (K. P Streubel, H. Jeon, Eds.), 6486:64860M, 2007

• doi:10.1117/12.698987
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Miran Bürmen, Franjo Pernuš, Boštjan Likar

Quality assurance of light-emitting diodes

11th International Symposium on the Science and Technology of Light Sources - Light Sources 2007, May 20-24, Shanghai, China (M. Q. Liu, R. Devonshire, Eds.), 609-610, 2007

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Darko Škerl, Boštjan Likar, Franjo Pernuš

Evaluation of similarity measures for 3D/2D image registration

SPIE Medical Imaging 2006: Image Processing, Feb 11-16, San Diego, CA, USA (J. M. Reinhardt, J. P. W. Pluim, Eds.), 6144:61442F, 2006

• doi:10.1117/12.652088
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Darko Škerl, Boštjan Likar, Franjo Pernuš

Evaluation of similarity measures for non-rigid registration

3rd International Workshop on Biomedical Image Registration - WBIR 2006, Jul 9-11, Utrecht, the Netherlands (J. P. W. Pluim, B. Likar, F. A. Gerritsen, Eds.), Lecture Notes in Computer Science 4057:160-168, 2006

• doi:10.1007/11784012_20
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Tomaž Vrtovec, Sébastien Ourselin, Lavier Gomes, Boštjan Likar, Franjo Pernuš

Generation of curved planar reformations from magnetic resonance images of the spine

9th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2006, Oct 1-6, Copenhagen, Denmark (R. Larsen, M. Nielsen, J. Sporring, Eds.), Lecture Notes in Computer Science 4191:135-143, 2006

• doi:10.1007/11866763_17
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Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Curved planar reformation of CT spine data

SPIE Medical Imaging 2005: Image Processing, Feb 13-17, San Diego, CA, USA (J. M. Fitzpatrick, J. M. Reinhardt, Eds.), 5747:1446-1456, 2005

• doi:10.1117/12.595113
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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Reconstruction-based 3D/2D image registration

8th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Oct 26-30, Palm Springs, CA, USA (J. Duncan, G. Gerig, Eds.), Lecture Notes in Computer Science 3750:231-238, 2005

• doi:10.1007/11566489_29
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Uroš Vovk, Franjo Pernuš, Boštjan Likar

Simultaneous correction of intensity inhomogeneity in multi-channel MR images

27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC '05, Sep 1-4, Shanghai, China, 4290-4293, 2005

• doi:10.1109/IEMBS.2005.1615413
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Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Spine-based coordinate system

27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC '05, Sep 1-4, Shanghai, China, 5120-5123, 2005

• doi:10.1109/IEMBS.2005.1615629
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Tomaž Vrtovec, Boštjan Likar, Dejan Tomaževič, Franjo Pernuš

Automated robust generation of compact 3D statistical shape models

SPIE Medical Imaging 2004: Image Processing, Feb 16-19, San Diego, CA, USA (J. M. Fitzpatrick, M. Sonka, Eds.), 5370:1312-1323, 2004

• doi:10.1117/12.533470
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Darko Škerl, Boštjan Likar, Franjo Pernuš

Evaluation of nine similarity measures used in rigid registration

17th International Conference on Pattern Recognition - ICPR 2004, Aug 23-26, Cambridge, UK (J. Kittler et al., Eds.), 794-797, 2004

• doi:10.1109/ICPR.2004.1334648
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Marko Bukovec, Roel Truyen, Boštjan Likar, Rok Bernard, Franjo Pernuš

Image segmentation by connected parametrical models

SPIE Medical Imaging 2004: Image Processing, Feb 16-19, San Diego, CA, USA (J. M. Fitzpatrick, M. Sonka, Eds.), 5370:398-409, 2004

• doi:10.1117/12.533629
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Uroš Vovk, Franjo Pernuš, Boštjan Likar

Multi-feature intesity inhomogeneity correction in MR images

7th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004, Sep 26-30, Rennes Saint-Malo, France (C. Barillot, D. R. Haynor, P. Hellier, Eds.), Lecture Notes in Computer Science 3217:283-290, 2004

• doi:10.1007/b100265
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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Multi-feature mutual information

SPIE Medical Imaging 2004: Image Processing, Feb 16-19, San Diego, CA, USA (J. M. Fitzpatrick, M. Sonka, Eds.), 5370:143-154, 2004

• doi:10.1117/12.531007
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Mario Medved, Roel Truyen, Boštjan Likar, Franjo Pernuš

Segmentation and segment connection of obstructed colon

SPIE Medical Imaging 2004: Image Processing, Feb 16-19, San Diego, CA, USA (J. M. Fitzpatrick, M. Sonka, Eds.), 5370:467-474, 2004

• doi:10.1117/12.533665
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Darko Škerl, Boštjan Likar, Rok Bernard, Franjo Pernuš

A protocol for optimization-independent similarity measure evaluation

2nd International Workshop on Biomedical Image Registration - WBIR 2003, Jun 23-24, Philadelphia, PA, USA (J. C. Gee, J. B. A. Maintz, M. W. Vannier, Eds.), Lecture Notes in Computer Science 2717:330-338, 2003

• doi:10.1007/b11804
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Uroš Vovk, Franjo Pernuš, Boštjan Likar

Correction of multi-spectral MRI intensity non-uniformity via spatially regularized feature condensing

SPIE Medical Imaging 2003: Image Processing, Feb 17-20, San Diego, CA, USA (M. Sonka, J. M. Fitzpatrick, Eds.), 5032:788-794, 2003

• doi:10.1117/12.480182
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Uroš Vovk, Franjo Pernuš, Boštjan Likar

Retrospective correction of MR intensity inhomogeneity via regularised feature condensing

8th Computer Vision Winter Workshop - CVWW 2003, Feb 3-6, Valtice, Czech Republic (O. Drbohlav, Ed.), 165-168, 2003

• http://cmp.felk.cvut.cz/cmp/events/CVWW2003/
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Tomaž Vrtovec, Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Statistical deformable model of a lumbar vertebra

8th Computer Vision Winter Workshop - CVWW 2003, Feb 3-6, Valtice, Czech Republic (O. Drbohlav, Ed.), 91-96, 2003

• http://cmp.felk.cvut.cz/cmp/events/CVWW2003/
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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Validation data for 2D/3D registration of medical images

8th Computer Vision Winter Workshop - CVWW 2003, Feb 3-6, Valtice, Czech Republic (O. Drbohlav, Ed.), 15-19, 2003

• http://cmp.felk.cvut.cz/cmp/events/CVWW2003/
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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Gold standard 2D/3D registration of X-ray to CT and MR images

5th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2002, Sep 25-28, Tokyo, Japan (T. Dohi, R. Kikinis, Eds.), Lecture Notes in Computer Science 2489:461-468, 2002

• doi:10.1007/3-540-45787-9_58
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Franjo Pernuš, Rihard Karba, Rok Bernard, Jože Derganc, Boštjan Likar

Machine vision in Slovenia

Korea-Slovenia Joint Symposium on Intelligent Systems - COEX 2002, May 26, Seoul, Korea, 58-61, 2002

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Jože Derganc, Boštjan Likar, Franjo Pernuš

Non-parametric segemntation of multi-spectral MR images incorporating spatial and intensity information

SPIE Medical Imaging 2002: Image Processing, Feb 24-28, San Diego, CA, USA (M. Sonka, J. M. Fitzpatrick, Eds.), 4684:391-400, 2002

• doi:10.1117/12.467181
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Uroš Vovk, Franjo Pernuš, Boštjan Likar

Retrospective correction of MR intensity inhomogeneity via regularised feature condensing

11. mednarodna elektrotehniška in računalniška konferenca - 11th International Electrotechnical and Computer Science Conference - ERK 2002, Sep 23-25, Portorož, Slovenia (B. Zajc, Ed.), B:271-274, 2002

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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Rigid 2D/3D registration of intraoperative digital X-ray images and preoperative CT and MR images

SPIE Medical Imaging 2002: Image Processing, Feb 24-28, San Diego, CA, USA (M. Sonka, J. M. Fitzpatrick, Eds.), 4684:507-517, 2002

• doi:10.1117/12.467193
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Jože Derganc, Boštjan Likar, Franjo Pernuš

Segmentation-based correction of spectral inhomogeneities in color images

7th Computer Vision Winter Workshop - CVWW 2002, Feb 4-7, Bad Aussee, Austria (H. Wildenauer, W. Kropatsch, Eds.), 178-187, 2002

• https://www.prip.tuwien.ac.at/cvww02/
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Boštjan Likar, Jože Derganc, Franjo Pernuš

Segmentation-based retrospective correction of intensity non-uniformity in multi-spectral MR images

SPIE Medical Imaging 2002: Image Processing, Feb 24-28, San Diego, CA, USA (M. Sonka, J. M. Fitzpatrick, Eds.), 4684:1531-1540, 2002

• doi:10.1117/12.467120
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Rok Bernard, Boštjan Likar, Franjo Pernuš

Statistical model-based segmentation of articulated structures

7th Computer Vision Winter Workshop - CVWW 2002, Feb 4-7, Bad Aussee, Austria (H. Wildenauer, W. Kropatsch, Eds.), 169-177, 2002

• https://www.prip.tuwien.ac.at/cvww02/
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Jože Derganc, Boštjan Likar, Rok Bernard, Dejan Tomaževič, Franjo Pernuš

Automated visual inspection of color tablets in pharmaceutical blisters

5th International Conference on Quality Control by Artificial Vision - QCAV 2001, May 21-23, Le Creusot, France, 2:415-420, 2001

• http://www.tc-iaip.org/qcav/
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Darko Škerl, Shiyan Pan, Rui Li, Michael J. Fitzpatrick, Mitchell H. Parks, Peter R. Martin, Victoria L. Morgan, Benoit M. Dawant

Correction of geometric distortions in EP images using non-rigid registration to corresponding anatomic images

SPIE Medical Imaging 2001: Image Processing, Feb 19-22, San Diego, CA, USA (M. Sonka, K. M. Hanson, Eds.), 4322:58-68, 2001

• doi:10.1117/12.431140
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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Gradient-based registration of 3D MR and 2D X-ray images

15th Congress on Computed Assisted Radiology and Surgery - CARS 2001, Jun 27-20, Berlin, Germany (H. U. Lemke, Ed.), 327-332, 2001

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Jože Derganc, Boštjan Likar, Rok Bernard, Dejan Tomaževič, Franjo Pernuš

Machine vision system for quality control of color tablets in pharmaceutical blisters

10. mednarodna elektrotehniška in računalniška konferenca - 10th International Electrotechnical and Computer Science Conference - ERK 2001, Sep 24-26, Portorož, Slovenia (B. Zajc, Ed.), B:305-308, 2001

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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Registration of MR and X-ray images

6th Computer Vision Winter Workshop - CVWW 2001, Feb 7-9, Bled, Slovenia (B. Likar, Ed.), 92-103, 2001

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Jože Derganc, Boštjan Likar, Franjo Pernuš

Segmentation of shaded color images by non-parametric analysis of feature space

6th Computer Vision Winter Workshop - CVWW 2001, Feb 7-9, Bled, Slovenia (B. Likar, Ed.), 13-24, 2001

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Rok Bernard, Boštjan Likar, Franjo Pernuš

Segmenting articulated structures by hierarchical statistical modeling of shape, appearance, and topology

4th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2001, Oct 14-17, Utrecht, the Netherlands (W. J. Niessen, M. A. Viergever, Eds.), Lecture Notes in Computer Science 2208:499-506, 2001

• doi:10.1007/3-540-45468-3_60
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Jože Derganc, Boštjan Likar, Franjo Pernuš

Shading correction and segmentation of color images

2nd International Symposium on Image and Signal Processing and Analysis - ISPA 2001, Jun 19-21, Pula, Croatia (S. Lončarić, H. Babić, Eds.), 345-350, 2001

• doi:10.1109/ISPA.2001.938653
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Jerneja Gros, France Mihelič, Nikola Pavešić, Mario Žganec, Aleš Mihelič, Marko Knez, Aleš Mercun, Darko Škerl

The phonetic SMS reader

4th International Conference on Text, Speech and Dialogue - TSD 2001, Sep 11-13, Železná Ruda, Czech Republic (V. Matoušek et al., Eds.), Lecture Notes in Artificial Intelligence 2166:334-340, 2001

• https://link.springer.com/book/10.1007/3-540-44805-5?page=4
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Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

A comparison of retrospective shading correction techniques

15th International Conference on Pattern Recognition - ICPR 2000, Sep 3-7, Barcelona, Spain (A. Sanfeliu, Ed.), 3:564-567, 2000

• doi:10.1109/ICPR.2000.903608
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Jože Derganc, Franjo Pernuš

A machine vision system for inspecting bearings

Czech Pattern Recognition Workshop - CPRW 2000, Feb 2-4, Peršlak, Czech Republic (T. Svoboda, Ed.), 161-166, 2000

• http://cmp.felk.cvut.cz/cmp/events/cprw2000/proceedings/
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Jože Derganc, Franjo Pernuš

A machine vision system for inspecting bearings

15th International Conference on Pattern Recognition - ICPR 2000, Sep 3-7, Barcelona, Spain (A. Sanfeliu, Ed.), 4:752-755, 2000

• doi:10.1109/ICPR.2000.903026
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Dejan Stojaković, Franjo Pernuš

Blister inspection by principal component analysis

9. mednarodna elektrotehniška in računalniška konferenca - 9th International Electrotechnical and Computer Science Conference - ERK 2000, Sep 21-23, Portorož, Slovenia (B. Zajc, Ed.), 249-252, 2000

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Jože Derganc, Franjo Pernuš

Color image segmentation by nonparametric analysis of feature space

9. mednarodna elektrotehniška in računalniška konferenca - 9th International Electrotechnical and Computer Science Conference - ERK 2000, Sep 21-23, Portorož, Slovenia (B. Zajc, Ed.), B:197-2000, 2000

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Boštjan Likar, J.B. Antoine Maintz, Max A. Viergever, Franjo Pernuš

Correction of intensity variations by entropy minimization

SPIE Medical Imaging 2000: Image Processing, Feb 14-17, San Diego, CA, USA (K. M. Hanson, Ed.), 3979:1350-1361, 2000

• doi:10.1117/12.387645
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Boštjan Likar, Franjo Pernuš

Information-theoretic correction of MR intensity inhomogeneity

9. mednarodna elektrotehniška in računalniška konferenca - 9th International Electrotechnical and Computer Science Conference - ERK 2000, Sep 21-23, Portorož, Slovenia (B. Zajc, Ed.), B:221-224, 2000

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Boštjan Šimunič, Boštjan Likar, Vojko Valenčič, Franjo Pernuš

Inhomogeneity correction of MR images by homomorphic filtering

9. mednarodna elektrotehniška in računalniška konferenca - 9th International Electrotechnical and Computer Science Conference - ERK 2000, Sep 21-23, Portorož, Slovenia (B. Zajc, Ed.), B:225-228, 2000

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Matevž Mutec, Jurij F. Tasič, Boštjan Likar, Franjo Pernuš

Normalization of MR image intensities

9. mednarodna elektrotehniška in računalniška konferenca - 9th International Electrotechnical and Computer Science Conference - ERK 2000, Sep 21-23, Portorož, Slovenia (B. Zajc, Ed.), B:229-232, 2000

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Boštjan Likar, Max A. Viergever, Franjo Pernuš

Retrospective correction of MR intensity inhomogeneity by information minimization

3rd International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2000, Oct 11-14, Pittsburgh, PA, USA (S. L. Delp, A. M. DiGioia, B. Jaramaz, Eds.), Lecture Notes in Computer Science 1935:375-384, 2000

• doi:10.1007/978-3-540-40899-4_38
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Boštjan Likar, Franjo Pernuš

Retrospective shading correction of microscopical images

Czech Pattern Recognition Workshop - CPRW 2000, Feb 2-4, Peršlak, Czech Republic (T. Svoboda, Ed.), 5-14, 2000

• http://cmp.felk.cvut.cz/cmp/events/cprw2000/proceedings/
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Dejan Tomaževič, Boštjan Likar,Franjo Pernuš

Retrospective shading correction: problem, methods and evaluation

Czech Pattern Recognition Workshop - CPRW 2000, Feb 2-4, Peršlak, Czech Republic (T. Svoboda, Ed.), 15-20, 2000

• http://cmp.felk.cvut.cz/cmp/events/cprw2000/proceedings/
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Marko Bukovec, Jožef Casar, Dejan Gradišar

Control and supervision of a modular production line

5th International, Cultural and Academic Meeting of Engineering Students - ICAMES'99, May 15-21, Istanbul, Turkey, 113-142, 1999

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Boštjan Likar, Franjo Pernuš

Elastic registration of muscle fibres

1st International Workshop on Biomedical Image Registration - WBIR 1999, Aug 30-31, Bled, Slovenia (F. Pernuš, et al., Eds.), 24-45, 1999

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Jože Derganc, Franjo Pernuš

Kontrola kvalitete injekcijskih igel z računalniškim vidom

8. mednarodna elektrotehniška in računalniška konferenca - 8th International Electrotechnical and Computer Science Conference - ERK 1999, Sep 23-25, Portorož, Slovenia (B. Zajc, Ed.), B:261-264, 1999

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Boštjan Likar, Franjo Pernuš

Matching images of muscle fibres

4th Computer Vision Winter Workshop - CVWW 1999, Feb 8-10, Rastenfeld, Austria (N. Brändle, Ed.), 90-101, 1999

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Aleš Klemenčič, Stansilav Kovačič, Franjo Pernuš

Modeling morphological changes during contraction of muscle fibres by active contours

8th International Conference on Computer Analysis of Images and Patterns - CAIP'99, Sep 1-3, Ljubljana, Slovenia (F. Solina, A. Leonardis, Eds.), Lecture Notes in Computer Science 1689:134-141, 1999

• doi:10.1007/3-540-48375-6_17
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Boštjan Likar, Franjo Pernuš

Automated point-based registration of medical images

3rd Computer Vision Winter Workshop - CVWW 1998, Feb 9-12, Gozd Martuljek, Slovenia (A. Leonardis, F. Solina, Eds.), 147-156, 1998

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Andrej Krašna, Dejan Tomaževič, Boštjan Likar, Franjo Pernuš

Automatic measurement of inhibition zones

7. mednarodna elektrotehniška in računalniška konferenca - 7th International Electrotechnical and Computer Science Conference - ERK 1998, Sep 24-26, Portorož, Slovenia (B. Zajc, Ed.), B:293-296, 1998

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Jani Pušenjak, Tadej Kotnik, Boštjan Likar, Franjo Pernuš

Image registration by the cepstrum technique

7. mednarodna elektrotehniška in računalniška konferenca - 7th International Electrotechnical and Computer Science Conference - ERK 1998, Sep 24-26, Portorož, Slovenia (B. Zajc, Ed.), B:243-246, 1998

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Jože Derganc, Franjo Pernuš

Integrirani sistemi z računalniškim vidom - kontrola kvalitete ležajev električnega števca

7. mednarodna elektrotehniška in računalniška konferenca - 7th International Electrotechnical and Computer Science Conference - ERK 1998, Sep 24-26, Portorož, Slovenia (B. Zajc, Ed.), B:285-288, 1998

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Janez Zaletelj, Boštjan Likar, Jurij F. Tasič, Franjo Pernuš

Nonlinear diffusion filtering for point-based image registration

7. mednarodna elektrotehniška in računalniška konferenca - 7th International Electrotechnical and Computer Science Conference - ERK 1998, Sep 24-26, Portorož, Slovenia (B. Zajc, Ed.), B:257-260, 1998

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Boštjan Likar, Franjo Pernuš

Point-based medical image matching: an automatic algorithm for point extraction

SPIE Medical Imaging 1998: Image Processing, Feb 23-26, San Diego, CA, USA (K. M. Hanson, Ed.), 3338:1186-1197, 1998

• doi:10.1117/12.310846
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Rok Bernard, Boštjan Likar, Damijan Miklavčič, Franjo Pernuš

A computer vision system for counting cell colonies

Computer-Aided Data Analysis in Medicine - CADAM 1997, Nov 12, Bled, Slovenia (I. Kononenko, T. Urbančič, Eds.), 37-45, 1997

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Boštjan Likar, Franc Solina, Franjo Pernuš

Automatic image registration by optimising the parameters of the registration model

6. mednarodna elektrotehniška in računalniška konferenca - 6th International Electrotechnical and Computer Science Conference - ERK 1997, Sep 25-27, Portorož, Slovenia (B. Zajc, Ed.), B:227-280, 1997

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Franjo Pernuš, Aleš Leonardis, Stanislav Kovačič

Planning multiple views for 3-D object recognition and pose determination

7th International Conference on Computer Analysis of Images and Patterns - CAIP'97, Sep 10-12, Kiel, Germany (G. Sommer, K. Daniilidis, J. Paul, Eds.), Lecture Notes in Computer Science 1296:424-431, 1997

• doi:10.1007/3-540-63460-6_146
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Boštjan Likar, Rok Bernard, Franjo Pernuš

Contrast matching techniques for digital subtraction radiography: An objective evaluation

1996 AMIA Annual Fall Symposium, Oct 26-30, Washington, DC, USA (J. J. Cimino, Ed.), 294-298, 1996

• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2232988/
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Boštjan Likar, Franjo Pernuš

Quantification of marginal bone changes by computer-aided analysis of radiographs

4. mednarodna elektrotehniška in računalniška konferenca - 4th International Electrotechnical and Computer Science Conference - ERK 1995, Sep 25-27, Portorož, Slovenija (B. Zajc, Ed.), B:337-340, 1995

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