Papers in Journals

Lara Dular, Žiga Špiclin

Analysis of brain age gap across subject cohorts and prediction model architectures

Biomedicines, 12(9):2139, 2024

JCR Impact Factor: 3.9 (2023) -- Best Category: 85/354 pharmacology & pharmacy -- Quartile: 1

• doi:10.3390/biomedicines12092139
• COBISS-ID:208778243
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Papers in Journals

Žiga Bizjak, Žiga Špiclin

Aneurysm growth evaluation and detection: a computer-assisted follow-up MRA analysis

Scientific Reports, 14:19609, 2024

JCR Impact Factor: 3.8 (2024) -- Best Category: 25/134 multidisciplinary sciences -- Quartile: 1

• doi:10.1038/s41598-024-70453-z
• COBISS-ID:208225283
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Papers in Journals

Andrej Planinc, Nina Špegel, Zala Podobnik, Uroš Šinigoj, Petra Skubic, June Ho Choi, Wonhyoung Park, Tina Robič, Nika Tabor, Leon Jarabek, Žiga Špiclin, Žiga Bizjak

Assessing accuracy and consistency in intracranial aneurysm sizing: human expertise vs. artificial intelligence

Scientific Reports, 14:16080, 2024

JCR Impact Factor: 3.8 (2024) -- Best Category: 25/134 multidisciplinary sciences -- Quartile: 1

• doi:10.1038/s41598-024-65825-4
• COBISS-ID:204579587
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Papers in Journals

Lara Dular, Žiga Špiclin

BASE: brain age standardized evaluation

NeuroImage, 285:120469, 2024

JCR Impact Factor: 4.7 (2023) -- Best Category: 1/15 neuroimaging -- Quartile: 1

• doi:10.1016/j.neuroimage.2023.120469
• COBISS-ID:176687875
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Papers in Journals

Sepideh Amiri, Reza Karimzadeh, Tomaž Vrtovec, Erik Gudmann Steuble Brandt, Henrik S. Thomsen, Michael Brun Andersen, Christoph Felix Müller, Anders Bertil Rodell, Bulat Ibragimov

Centerline-guided reinforcement learning model for pancreatic duct identifications

Journal of Medical Imaging, 11(6):064002, 2024

JCR Impact Factor: 1.9 (2023) -- Best Category: 103/204 radiology, nuclear medicine & medical imaging -- Quartile: 3

• doi:10.1117/1.JMI.11.6.064002
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Papers in Journals

Domen Rački, Dejan Tomaževič, Danijel Skočaj

Coupling of unsupervised and supervised deep learning-based approaches for surface anomaly detection

Journal of Electronic Imaging, 33(3):031207, 2024

JCR Impact Factor: 1.0 (2023) -- Best Category: 285/352 engineering, electrical & electronic -- Quartile: 4

• doi:10.1117/1.JEI.33.3.031207
• COBISS-ID:197226499
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Papers in Journals

Žiga Bizjak, Tina Robič

DentAge: Deep learning for automated age prediction using panoramic dental X-ray images

Journal of Forensic Sciences, 2024

JCR Impact Factor: 1.5 (2023) -- Best Category: 10/23 medicine, legal -- Quartile: 2

• doi:10.1111/1556-4029.15629
• COBISS-ID:208221955
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Papers in Journals

Ernesto Pini, Peter Naglič, Miran Bürmen, Alexander Gatto, Henrik Schäfer, Diederik S. Wiersma, Lorenzo Pattelli

Experimental determination of effective light transport properties in fully anisotropic media

Advanced Photonics Nexus, 3(5):056017, 2024

• doi:10.1117/1.APN.3.5.056017
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Papers in Journals

Lara Dular, Franjo Pernuš, Žiga Špiclin

Extensive T1-weighted MRI preprocessing improves generalizability of deep brain age prediction models

Computers in Biology and Medicine, 173:108320, 2024

JCR Impact Factor: 7.0 (2023) -- Best Category: 2/65 mathematical & computational biology -- Quartile: 1

• doi:10.1016/j.compbiomed.2024.108320
• COBISS-ID:189802499
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Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Elias Tappeiner, Chanwoong Lee, Jin Sung Kim, Zacharia Mesbah, Romain Modzelweski, Yihao Ma, Fan Yang, Mikołaj Rudecki, Marek Wodziński, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

HaN-Seg: The head and neck organ-at-risk CT and MR segmentation challenge

Radiotherapy and Oncology, 198:110410, 2024

JCR Impact Factor: 4.9 (2023) -- Best Category: 20/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

• doi:10.1016/j.radonc.2024.110410
• COBISS-ID:202738179
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Papers in Journals

Maj Jožef, Igor Locatelli, Gregor Brecl Jakob, Lina Savšek, Katarina Šurlan Popovič, Žiga Špiclin, Uroš Rot, Mitja Kos

Psychometric evaluation of the 5-item Medication Adherence Report Scale questionnaire in persons with multiple sclerosis

PLoS One, 19(3):e0294116, 2024

JCR Impact Factor: 2.9 (2023) -- Best Category: 31/134 multidisciplinary sciences -- Quartile: 1

• doi:10.1371/journal.pone.0294116
• COBISS-ID:188641539
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Papers in Journals

Sepideh Amiri, Tomaž Vrtovec, Tamerlan Mustafaev, Christopher L. Deufel, Henrik S. Thomsen, Martin Hylleholt Sillesen, Erik Gudmann Steuble Brandt, Michael Brun Andersen, Christoph Felix Müller, Bulat Ibragimov

Reinforcement learning-based anatomical maps for pancreas sub-region and duct segmentation

Medical Physics, 51(10):7378-7392, 2024

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

• doi:10.1002/mp.17300
• COBISS-ID:202626819
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Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

vOARiability: interobserver and intermodality variability analysis in OAR contouring from head and neck CT and MR images

Medical Physics, 51(3):2175-2186, 2024

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

• doi:10.1002/mp.16924
• COBISS-ID:181670147
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Papers in Conference Proceedings

Domen Ocepek, Gašper Podobnik, Bulat Ibragimov, Tomaž Vrtovec

Deep implicit statistical shape models for 3D lumbar vertebrae image delineation

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292638, 2024

• doi:10.1117/12.3007664
• COBISS-ID:191585795
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Papers in Conference Proceedings

Luka Škrlj, Matija Jelenc, Tomaž Vrtovec

Deep learning-based landmark localization in 3D CT images of the heart: method and dataset comparison

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:129260F, 2024

• doi:10.1117/12.3006326
• COBISS-ID:192626179
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Papers in Conference Proceedings

June H. Choi, Žiga Bizjak, Wonhyoung Park, Jannik Sobisch, Žiga Špiclin

Deep shape based intracranial aneurysm rupture prediction

SPIE Medical Imaging 2024: Computer-Aided Diagnosis, Feb 18-22, San Diego, CA, USA (W. Chen, S.M. Astley, Eds.), 12927:129272I, 2024

• doi:10.1117/12.3007178
• COBISS-ID:194163459
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Papers in Conference Proceedings

Peter Naglič, Zuhail P. Kottoli, Matjaž Humar

Digital holography with embedded microlasers: a preliminary study

SPIE Photonics West 2024: Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XXII, Jan 27-Feb 1, San Francisco, CA, USA (A. Tarnok, J.P. Houston, Eds.), 12846:1284609, 2024

• doi:10.1117/12.3001423
• COBISS-ID:192158723
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Papers in Conference Proceedings

Anamarija Hauptman, Maruša Petrovčič, Žiga Špiclin, Žiga Bizjak

Določanje ravnine za zaznavanje ovir in proste poti avtonomnega mobilnega robota

33. mednarodna elektrotehniška in računalniška konferenca - 33rd International Electrotechnical and Computer Science Conference - ERK 2024, Sep 26-27, Portorož, Slovenia, 536-566, 2024

• https://erk.fe.uni-lj.si/2024/
• COBISS-ID:209321731
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Papers in Conference Proceedings

Ema Masterl, Anja Parkelj, Tina Vipotnik Vesnaver, Žiga Špiclin

Enhancing prenatal diagnosis: automated fetal brain MRI morphometry

9th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2024, Held in Conjunction with MICCAI 2024, Oct 6, Marrakesh, Morocco, Lecture Notes in Computer Science 14747:105-116, 2024

• doi:10.1007/978-3-031-73260-7_10
• COBISS-ID:212935171
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Papers in Conference Proceedings

Gašper Podobnik, Tomaž Vrtovec

HDilemma: Are open-source Hausdorff distance implementations equivalent?

27th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, Oct 6-10, Marrakesh, Morocco, Lecture Notes in Computer Science 15009:308-317, 2024

• doi:10.1007/978-3-031-72114-4_30
• COBISS-ID:214283523
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Papers in Conference Proceedings

Peter Naglič, Ernesto Pini, Lorenzo Pattelli, Miran Bürmen

Massively parallel Monte Carlo simulations of light propagation in anisotropic scattering media by open-source PyXOpto engine

SPIE Photonics West 2024: Biomedical Applications of Light Scattering XIV, Jan 27-Feb 1, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 12856:1285608, 2024

• doi:10.1117/12.3001838
• COBISS-ID:190648835
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Papers in Conference Proceedings

Kamil Ibragimov, Gašper Podobnik, Teodor Trojner, Gregor Rečnik, Tomaž Vrtovec

Mid-sagittal cross-section identification for vertebra landmarking in MR spine images

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292637, 2024

• doi:10.1117/12.3007593
• COBISS-ID:191582979
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Papers in Conference Proceedings

Ana Marin, Peter Naglič, Miran Bürmen

Open-source protocol for preparation of turbid phantoms with microsphere suspensions

SPIE Photonics West 2024: Design and Quality for Biomedical Technologies XVII, Jan 27-Feb 1, San Francisco, CA, USA (G. Vargas, Ed.), 12833:1283305, 2024

• doi:10.1117/12.3001626
• COBISS-ID:190112003
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Papers in Conference Proceedings

David Hožič, Blaž Primšar, Žiga Špiclin, Žiga Bizjak

Samodejno zaznavanje ovir z RGB+D kamero za vodenje avtonomnega mobilnega robota

33. mednarodna elektrotehniška in računalniška konferenca - 33rd International Electrotechnical and Computer Science Conference - ERK 2024, Sep 26-27, Portorož, Slovenia, 567-572, 2024

• https://erk.fe.uni-lj.si/2024/
• COBISS-ID:209328899
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• Open access

Papers in Conference Proceedings

Ernesto Pini, Peter Naglič, Miran Bürmen, Alexander Gatto, Henrik Schäfer, Diederik Wiersma, Lorenzo Pattelli

Time-resolved light transport in structurally anisotropic media

SPIE Photonics West 2024: Biomedical Applications of Light Scattering XIV, Jan 27-Feb 1, San Francisco, CA, USA (A. Wax, V. Backman, Eds.), 12856:1285606, 2024

• doi:10.1117/12.3002766
• COBISS-ID:190296835
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Papers in Conference Proceedings

Tomaž Vrtovec, Luka Škrlj

Zgodnje odkrivanje tveganja nenalezljivih bolezni pri bolnikih z rakom dojk na podlagi umetne inteligence (projekt ARTILLERY)

35. onkološki vikend: Umetna inteligenca v onkologiji in spremljanje bolnikov z rakom po zaključenem zdravljenju, 10. in 11. maj 2024, Portorož, Slovenija, 30-37, 2024

• https://www.onko-i.si/onkoloski-vikend
• COBISS-ID:195414019
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Abstracts in Conference Proceedings

Andraž Mehle, Domen Kitak, Mila Kovačević, Ana Baumgartner, Dejan Tomaževič

Advancing machine vision for high-shear granulation: building a deep learning model for formulation-independent in-process monitoring

APACT USA Conference 2024, Apr 23-25, New Brunswick, NJ, USA, 2024

• COBISS-ID:196210691
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Books and Book Chapters

Marc Modat, Ivor Simpson, Žiga Špiclin, Wietske Bastiaansen, Alessa Hering, Tony C. W. Mok

11th International Workshop on Biomedical Image Registration, WBIR 2024, Held in Conjunction with MICCAI 2024, Oct 6, Marrakesh, Morocco

Lecture Notes in Computer Science, 15249, 2024

• doi:10.1007/978-3-031-73480-9
• COBISS-ID:212964867
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Doctoral Disssertations

Žiga Bizjak

Artificial intelligence based analysis of cerebral angiograms for aneurysm diagnosis and prognosis

PhD thesis: University of Ljubljana, Faculty of Electrical Engineering, Slovenia (Ž. Špiclin), 2024

• COBISS-ID:200510211
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Other Publications

Gašper Podobnik, Tomaž Vrtovec

Metrics Revolutions: Groundbreaking insights into the implementation of metrics for biomedical image segmentation

arXiv, 2410.02630, 2024

• doi:10.48550/arXiv.2410.02630
• COBISS-ID:214626563
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