Our Publications

Publications for 'Bulat Ibragimov'

Papers in Journals

Sepideh Amiri, Reza Karimzadeh, Tomaž Vrtovec, Erik Gudmann Steuble Brandt, Henrik S. Thomsen, Michael Brun Andersen, Christoph Felix Müller, Anders Bertil Rodell, Bulat Ibragimov

Centerline-guided reinforcement learning model for pancreatic duct identifications

Journal of Medical Imaging, 11(6):064002, 2024

JCR Impact Factor: 1.9 (2023) -- Best Category: 103/204 radiology, nuclear medicine & medical imaging -- Quartile: 3

Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Elias Tappeiner, Chanwoong Lee, Jin Sung Kim, Zacharia Mesbah, Romain Modzelweski, Yihao Ma, Fan Yang, Mikołaj Rudecki, Marek Wodziński, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

HaN-Seg: The head and neck organ-at-risk CT and MR segmentation challenge

Radiotherapy and Oncology, 198:110410, 2024

JCR Impact Factor: 4.9 (2023) -- Best Category: 20/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Sepideh Amiri, Tomaž Vrtovec, Tamerlan Mustafaev, Christopher L. Deufel, Henrik S. Thomsen, Martin Hylleholt Sillesen, Erik Gudmann Steuble Brandt, Michael Brun Andersen, Christoph Felix Müller, Bulat Ibragimov

Reinforcement learning-based anatomical maps for pancreas sub-region and duct segmentation

Medical Physics, 51(10):7378-7392, 2024

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

vOARiability: interobserver and intermodality variability analysis in OAR contouring from head and neck CT and MR images

Medical Physics, 51(3):2175-2186, 2024

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Conference Proceedings

Domen Ocepek, Gašper Podobnik, Bulat Ibragimov, Tomaž Vrtovec

Deep implicit statistical shape models for 3D lumbar vertebrae image delineation

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292638, 2024

Papers in Journals

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

HaN-Seg: The head and neck organ-at-risk CT & MR segmentation dataset

Medical Physics, 50(3):1917-1927, 2023

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Conference Proceedings

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Multimodal CT and MR segmentation of head and neck organs-at-risk

26th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, Oct 8-12, Vancouver, Canada, Lecture Notes in Computer Science 14223:745-755, 2023

Other Publications

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

HaN-Seg: the head and neck organ-at-risk CT & MR segmentation dataset

Zenodo, 2023

Papers in Journals

Danis Alukaev, Semen Kiselev, Tamerlan Mustafaev, Ahatov Ainur, Bulat Ibragimov, Tomaž Vrtovec

A deep learning framework for vertebral morphometry and Cobb angle measurement with external validation

European Spine Journal, 31(8):2115-2124, 2022

JCR Impact Factor: 2.8 (2022) -- Best Category: 27/86 orthopedics -- Quartile: 2

Papers in Journals

Imad Eddine Ibrahim Bekkouch, Bulat Maksudov, Semen Kiselev, Tamerlan Mustafaev, Tomaž Vrtovec, Bulat Ibragimov

Multi-landmark environment analysis with reinforcement learning for pelvic abnormality detection and quantification

Medical Image Analysis, 78:102417, 2022

JCR Impact Factor: 10.9 (2022) -- Best Category: 3/135 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Tomaž Vrtovec, Bulat Ibragimov

Spinopelvic measurements of sagittal balance with deep learning: systematic review and critical evaluation

European Spine Journal, 31(8):2031-2045, 2022

JCR Impact Factor: 2.8 (2022) -- Best Category: 27/86 orthopedics -- Quartile: 2

Papers in Conference Proceedings

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Parotid gland segmentation with nnU-Net: deployment scenario and inter-observer variability analysis

SPIE Medical Imaging 2022: Image Processing, Feb 20-24, San Diego, CA, USA (I. Išgum, O. Colliot, Eds.), 12032:120321N, 2022

Papers in Conference Proceedings

Gašper Podobnik, Bulat Ibragimov, Primož Strojan, Primož Peterlin, Tomaž Vrtovec

Segmentation of organs-at-risk from CT and MR images of the head and neck: baseline results

19th IEEE Symposium on Biomedical Imaging - ISBI 2022, Mar 28-31, Kolkata India, 2022

Papers in Conference Proceedings

Imad Eddine Ibrahim Bekkouch, Tamerlan Aidinovich, Tomaž Vrtovec, Ramil Kuleev, Bulat Ibragimov

Multi-agent shape models for hip landmark detection in MR scans

SPIE Medical Imaging 2021: Image Processing, Feb 15-20, San Diego, CA, USA (I. Išgum, B. A. Landman, Eds.), 11596:115960O, 2021

Papers in Journals

Tomaž Vrtovec, Domen Močnik, Primož Strojan, Franjo Pernuš, Bulat Ibragimov

Auto-segmentation of organs at risk for head and neck radiotherapy planning: from atlas-based to deep learning methods

Medical Physics, 47(9):e929-e950, 2020

JCR Impact Factor: 4.071 (2020) -- Best Category: 27/186 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Maksym Kholiavchenko, Ilyas Sirazitdinov, Konstantin Kubrak, Rushania Badrutdinova, Ramil Kuleev, Yuxian Yuan, Tomaž Vrtovec, Bulat Ibragimov

Contour-aware multi-label chest X-ray organ segmentation

International Journal of Computer Assisted Radiology and Surgery, 15(4):425-436, 2020

JCR Impact Factor: 2.155 (2018) -- Best Category: 83/203 surgery -- Quartile: 2

Papers in Journals

Domen Močnik, Bulat Ibragimov, Lei Xing, Primož Strojan, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of parotid glands from registered CT and MR images

Physica Medica, 52:33-41, 2018

JCR Impact Factor: 2.532 (2018) -- Best Category: 53/129 radiology, nuclear medicine & medical imaging -- Quartile: 2

Papers in Journals

Guoyan Zheng, Chengwen Chu, Daniel L. Belavy, Bulat Ibragimov, Robert Korez, Tomaž Vrtovec, Hugo Hutt, Richard Everson, Judith Meakin, Isabel Lopez Andrade, Ben Glocker, Hao Chen, Qi Dou, Pheng-Ann Heng, Chunliang Wang, Daniel Forsberg, Aleš Neubert, Jurgen Fripp, Martin Urschler, Darko Štern, Maria Wimmer, Alexey A. Novikov, Hui Cheng, Gabriele Armbrecht, Dieter Felsenberg, Shuo Li

Evaluation and comparison of 3D intervertebral disc localization and segmentation methods for 3D T2 MR data: a grand challenge

Medical Image Analysis, 35:327-344, 2017

JCR Impact Factor: 5.356 (2017) -- Best Category: 6/105 computer science, interdisciplinary applications -- Quartile: 1

Papers in Journals

Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Lei Xing, Tomaž Vrtovec

Segmentation of pathological structures by landmark-assisted deformable models

IEEE Transactions on Medical Imaging, 36(7):1457-1469, 2017

JCR Impact Factor: 6.131 (2017) -- Best Category: 3/105 computer science, interdisciplinary applications -- Quartile: 1

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Intervertebral disc segmentation in MR images with 3D convolutional networks

SPIE Medical Imaging 2017: Image Processing, Feb 11-16, Orlando, FL, USA (M. A. Styner, E. D. Angelini, Eds.), 10133:1013306, 2017

Books and Book Chapters

Bulat Ibragimov, Tomaž Vrtovec

Landmark-based statistical shape representations

Chapter 4 of the book Statistical Shape and Deformation Analysis (Academic Press, Elsevier), 89-113, 2017

Papers in Journals

Ching-Wei Wang, Cheng-Ta Huang, Jia-Hong Lee, Chung-Hsing Li, Sheng-Wei Chang, Ming-Jhih Siao, Tat-Ming Lai, Bulat Ibragimov, Tomaž Vrtovec, Olaf Ronneberger, Philipp Fischer, Tim F. Cootes, Claudia Lindner

A benchmark for comparison of dental radiography analysis algorithms

Medical Image Analysis, 31:63-76, 2016

JCR Impact Factor: 4.188 (2016) -- Best Category: 8/105 computer science, interdisciplinary applications -- Quartile: 1

Papers in Journals

Jianhua Yao, Joseph E. Burns, Daniel Forsberg, Alexander Seitel, Abtin Rasoulian, Purang Abolmaesumi, Kerstin Hammernik, Martin Urschler, Bulat Ibragimov, Robert Korez, Tomaž Vrtovec, Isaac Castro-Mateos, Jose M. Pozo, Alejandro F. Frangi, Ronald M. Summers, Shuo Li

A multi-center milestone study of clinical vertebral CT segmentation

Computerized Medical Imaging and Graphics, 49:16-28, 2016

JCR Impact Factor: 1.738 (2016) -- Best Category: 72/126 radiology, nuclear medicine & medical imaging -- Quartile: 3

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Accurate landmark-based segmentation by incorporating landmark misdetections

13th IEEE International Symposium on Biomedical Imaging - ISBI 2016, Apr 12-16, Prague, Czech Republic (J. Kybic, M. Sonka, Eds.), 1072-1075, 2016

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor

3rd International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging - CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), Lecture Notes in Computer Science 9402:117-124, 2016

Abstracts in Conference Proceedings

Bulat Ibragimov, Franjo Pernuš, Primož Strojan, Lei Xing

TH-CD-206-05: Machine-learning based segmentation of organs at risks for head and neck radiotherapy planning

Medical Physics, 43(6):3883, 2016

JCR Impact Factor: 2.617 (2016) -- Best Category: 37/126 radiology, nuclear medicine & medical imaging -- Quartile: 2

Papers in Journals

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

A framework for automated spine and vertebrae interpolation-based detection and model-based segmentation

IEEE Transactions on Medical Imaging, 34(8):1649-1662, 2015

JCR Impact Factor: 3.756 (2015) -- Best Category: 13/255 engineering, electrical & electronic -- Quartile: 1

Papers in Journals

Ching-Wei Wang, Cheng-Ta Huang, Meng-Che Hsieh, Chung-Hsing Li, Sheng-Wei Chang, Wei-Cheng Li, Rémy Vandaele, Raphaël Marée, Sébastien Jodogne, Pierre Geurts, Cheng Chen, Guoyan Zheng, Chengwen Chu, Hengameh Mirzaalian, Ghassan Hamarneh, Tomaž Vrtovec, Bulat Ibragimov

Evaluation and comparison of anatomical landmark detection methods for cephalometric X-ray images: a grand challenge

IEEE Transactions on Medical Imaging, 34(9):1890-1900, 2015

JCR Impact Factor: 3.756 (2015) -- Best Category: 13/255 engineering, electrical & electronic -- Quartile: 1

Papers in Journals

Bulat Ibragimov, Jerry L. Prince, Emi Z. Murano, Jonghye Woo, Maureen Stone, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of tongue muscles from super-resolution magnetic resonance images

Medical Image Analysis, 20(1):198-207, 2015

JCR Impact Factor: 4.565 (2015) -- Best Category: 4/104 computer science, interdisciplinary applications -- Quartile: 1

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:85-94, 2015

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor

3rd Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2015, Oct 5, Munich, Germany (T. Vrtovec et al., Eds.), 111-118, 2015

Papers in Conference Proceedings

Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based detection of lumbar vertebrae in CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:73-84, 2015

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2014, held in conjunction with the 17th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 20:235-240, 2015

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Optimal reinforcement of training datasets in semi-supervised landmark-based segmentation

SPIE Medical Imaging 2015: Image Processing, Feb 21-26, Orlando, FL, USA (S. Ourselin, M. A. Styner, Eds.), 9413:94132K-1-6, 2015

Papers in Journals

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Shape representation for efficient landmark-based segmentation in 3D

IEEE Transactions on Medical Imaging, 33(4):861-874, 2014

JCR Impact Factor: 3.390 (2014) -- Best Category: 18/249 engineering, electrical & electronic -- Quartile: 1

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

An improved shape-constrained deformable model for segmentation of vertebrae from CT lumbar spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 76-85, 2014

Papers in Conference Proceedings

Bulat Ibragimov, Robert Korez, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based detection of lumbar vertebrae in CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 65-75, 2014

Papers in Conference Proceedings

Robert Korez, Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Interpolation-based shape-constrained deformable model approach for segmentation of vertebrae from CT spine images

2nd Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2014, Sep 14, Boston, MA, USA (J. Yao et al., Eds.), 208-213, 2014

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - CSI 2013, held in conjunctin with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), Lecture Notes in Computational Vision and Biomechanics 17:3--14, 2014

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Segmentation of vertebrae from 3D spine images by applying concepts from transportation and game theories

1st Workshop on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI 2013, Sep 26, Nagoya, Japan (Yao et al., Eds.), 1-12, 2013

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Statistical shape representation with landmark clustering by solving the assignment problem

SPIE Medical Imaging 2013: Image Processing, Feb 9-14, Lake Buena Vista, FL, USA (S. Ourselin, D. R. Haynor, Eds.), 8669:86690E, 2013

Papers in Journals

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

A game-theoretic framework for landmark-based image segmentation

IEEE Transactions on Medical Imaging, 31(9):1761-1776, 2012

JCR Impact Factor: 4.027 (2012) -- Best Category: 8/242 engineering, electrical & electronic -- Quartile: 1

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec

Automated measurement of anterior and posterior acetabular sector angles

SPIE Medical Imaging 2012: Computer-Aided Diagnosis, Feb 4-9, San Diego, CA, USA (B. van Ginneken, C. L. Novak, Eds.), 8315:83151U, 2012

Papers in Conference Proceedings

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš

Boundary detection by linear programming with application to lung fields segmentation

SPIE Medical Imaging 2011: Image Processing, Feb 12-17, Lake Buena Vista, FL, USA (B. M. Dawant, D. R. Haynor, Eds.), 7962:796231, 2011

Papers in Conference Proceedings

Bulat Ibragimov, Tomaž Vrtovec, Boštjan Likar, Franjo Pernuš

Segmentation of lung fields by game theory and dynamic programming

4th International Workshop on Pulmonary Image Analysis - PIA 2011, 18 Sep, Toronto, ON, Canada, 101-111, 2011

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