Our Publications

Publications for 'Gašper Podobnik'

Papers in Conference Proceedings

Gašper Podobnik, Domen Ocepek, Luka Škrlj, Tomaž Vrtovec

Implicitly explicit: segmenting vertebrae with deep implicit statistical shape models

4th International Workshop on Shape in Medical Imaging, ShapeMI 2024, Held in Conjunction with MICCAI 2024, Oct 6, Marrakesh, Morocco, Lecture Notes in Computer Science 15275:59-69, 2025

Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Elias Tappeiner, Chanwoong Lee, Jin Sung Kim, Zacharia Mesbah, Romain Modzelweski, Yihao Ma, Fan Yang, Mikołaj Rudecki, Marek Wodziński, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

HaN-Seg: The head and neck organ-at-risk CT and MR segmentation challenge

Radiotherapy and Oncology, 198:110410, 2024

JCR Impact Factor: 4.9 (2023) -- Best Category: 20/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Journals

Gašper Podobnik, Bulat Ibragimov, Primož Peterlin, Primož Strojan, Tomaž Vrtovec

vOARiability: interobserver and intermodality variability analysis in OAR contouring from head and neck CT and MR images

Medical Physics, 51(3):2175-2186, 2024

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Conference Proceedings

Domen Ocepek, Gašper Podobnik, Bulat Ibragimov, Tomaž Vrtovec

Deep implicit statistical shape models for 3D lumbar vertebrae image delineation

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292638, 2024

Papers in Conference Proceedings

Gašper Podobnik, Tomaž Vrtovec

HDilemma: Are open-source Hausdorff distance implementations equivalent?

27th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, Oct 6-10, Marrakesh, Morocco, Lecture Notes in Computer Science 15009:308-317, 2024

Papers in Conference Proceedings

Kamil Ibragimov, Gašper Podobnik, Teodor Trojner, Gregor Rečnik, Tomaž Vrtovec

Mid-sagittal cross-section identification for vertebra landmarking in MR spine images

SPIE Medical Imaging 2024: Image Processing, Feb 18-22, San Diego, CA, USA (O. Colliot, J. Mitra, Eds.), 12926:1292637, 2024

Other Publications

Gašper Podobnik, Tomaž Vrtovec

Metrics Revolutions: Groundbreaking insights into the implementation of metrics for biomedical image segmentation

arXiv, 2410.02630, 2024

Papers in Journals

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

HaN-Seg: The head and neck organ-at-risk CT & MR segmentation dataset

Medical Physics, 50(3):1917-1927, 2023

JCR Impact Factor: 3.2 (2023) -- Best Category: 46/204 radiology, nuclear medicine & medical imaging -- Quartile: 1

Papers in Conference Proceedings

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Multimodal CT and MR segmentation of head and neck organs-at-risk

26th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, Oct 8-12, Vancouver, Canada, Lecture Notes in Computer Science 14223:745-755, 2023

Other Publications

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

HaN-Seg: the head and neck organ-at-risk CT & MR segmentation dataset

Zenodo, 2023

Papers in Conference Proceedings

Gašper Podobnik, Primož Strojan, Primož Peterlin, Bulat Ibragimov, Tomaž Vrtovec

Parotid gland segmentation with nnU-Net: deployment scenario and inter-observer variability analysis

SPIE Medical Imaging 2022: Image Processing, Feb 20-24, San Diego, CA, USA (I. Išgum, O. Colliot, Eds.), 12032:120321N, 2022

Papers in Conference Proceedings

Gašper Podobnik, Bulat Ibragimov, Primož Strojan, Primož Peterlin, Tomaž Vrtovec

Segmentation of organs-at-risk from CT and MR images of the head and neck: baseline results

19th IEEE Symposium on Biomedical Imaging - ISBI 2022, Mar 28-31, Kolkata India, 2022

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