Oral health screening by hyperspectral imaging (J2-7211)

General information

Title
Oral health screening by hyperspectral imaging
Period
Jan 1, 2016 -- Dec 31, 2018
Range
1.63 FTE
Activity
2.06 - Engineering Sciences and Technologies / Systems and Cybernetics / Biomedical Tehnics

Abstract

Across the Europe and world, oral diseases present a major public health burden. Expenditure on the treatment of oral conditions often exceeds that of other diseases including cancer, heart disease, stroke and dementia, on average presenting about 10% of the annual health expenditure across the EU. Among the two most prominent oral disease and conditions are dental caries, which affects over 60% of school children and nearly all adults, while severe periodontal diseases affect from 15 to 20% of middleaged adults. Together, dental cavities and periodontal diseases form the two most prominent causes of tooth loss. An efficient management of the oral diseases could be achieved by novel state-of-the-art oral health screening systems that are suitable for clinical and home use. In this way, the oral health could be efficiently managed and monitored by each individual, lowering the burden on the healthcare systems and, at the same time, raising the awareness of people on importance of the everyday oral hygiene, the latter being particularly important in the case of children. However, achieving such ambitious objectives requires innovative and efficient solutions in several research fields. First, the information required to diagnose the most prominent oral disease must be acquired by noninvasive means. The most promising results for detection and quantification of diseased hard dental tissues were obtained by laser fluorescence (LF) and diffuse reflectance (DR) spectroscopy in the near infrared (NIR) spectral range. LF provides information on the mineral content, structure and presence of bacteria in the surface layers of hard dental tissues, while the less scattered NIR light penetrates deeper into the tissue and thereby complements the LF information. Furthermore, noninvasive functional and structural assessment of soft tissues can be efficiently conducted in the visible and the very near infrared spectral range. As effective screening for pathological and other changes of the oral cavity also requires detailed spatial information, hyperspectral imaging systems (HIS) that efficiently merge the spectral and spatial information seem as a perfect choice. However, the substantial differences among the three noninvasive optical techniques pose several challenges ranging from technical issues related to the spatial constraints imposed by the oral cavity, to the even more demanding analysis of the acquired multimodal hyperspectral images. Furthermore, imaging of the entire oral cavity may require acquisition of multiple partially overlapping hyperspectral images and the hyperspectral images of the oral cavity acquired at different time points will have to be registered into a common reference coordinate frame where the joint information can be efficiently analyzed and the temporal changes of oral cavity, resulting from progression of a disease or treatment, quantified. In the proposed project, we are going to focus on three main aspects of the oral cavity screening system: a) design of optical and illumination systems for acquisition of high fidelity multimodal hyperspectral images, b) development of novel robust image restoration and multimodal registration methods that will bring the hyperspectral images into a common reference coordinate frame where the acquired spectral, spatial and temporal information can be efficiently analyzed, and c) methods for reliable detection and quantification of incipient and secondary caries lesions and lesion activity from the restored and registered multimodal hyperspectral images covering the visible and NIR spectral range. With the proposed project, we expect to make a significant step towards screening systems for efficient management of oral health by reliable noninvasive diagnosis of oral diseases at the earliest stage. Such screening systems could significantly improve the quality of life among the aging European population and potentially result in huge costs savings associated to the treatment of oral diseases.

Researchers

Phases of the project and their realization

Work Packages (WPs)
WP I
Development of state-of-the art optical and illumination systems for seamless integration of the different hyperspectral imaging (HI) modalities and acquisition of high fidelity hyperspectral images
WP II
Development of novel robust image restoration and multimodal registration methods that will restore and bring the hyperspectral images into a common reference coordinate frame
WP III
Development of methods for extraction of the relevant diagnostic information from the restored and registered hyperspectral images
2016
Development and construction of a laboratory system for visible and near infrared diffuse reflectance and laser fluorescence hyperspectral imaging (WP I)
Completed
Development and assessment of novel methods for restoration of multimodal hyperspectral images by coregistration (WP II)
Completed
Development of novel methods for measurement of the 3D PSF and resolution enhancement by deconvolution (WP II)
Completed
Development of novel methods for registration of overlapping restored (calibrated orcoregistered) multimodal hyperspectral images into a common reference coordinate frame (WP II)
Completed
Dissemination of the results in SCI journals with high impact factor
Completed
2017
Creation of diffuse reflectance and laser fluorescence spectral collection with corresponding reference data (WP III)
Completed
Comparative assessment of different optical and illumination systems for intraoral and extraoral hyperspectral and multispectral imaging (WP I)
Completed
Comparative assessment of compact multispectral and snapshot hyperspectral imaging for intraoral and extraoral application (WP I)
Completed
Development and assessment of novel statistical methods for detection and quantification of caries lesions (WP III)
Completed
Characterization of optical properties of commonly used sealants in the near infrared spectral range (WP III)
Completed
Dissemination of the results in SCI journals with high impact factor
Completed
2018
Development of novel methods for detection and quantification of caries lesions by modeling the tissue structure and optical properties (WP III)
Completed
Study on the applicability of NIR diffuse reflectance hyperspectral imaging for detection of caries lesions under and next to sealants (WP III)
Completed
Development of novel statistical methods for detection and quantification of caries lesions aided by assessment of water evaporation dynamics and differential temporal information extracted from registered multimodal hyperspectral images (WP III)
Completed
Identification of the most relevant spectral bands for diffuse reflectance and laser fluorescence hyperspectral imaging (WP III)
Completed
Development of compact optical and illumination systems for screening of oral cavity by hyperspectral imaging (WP I)
Completed
Dissemination of the results in SCI journals with high impact factor
Completed

Bibliographics records

1.
Peter Naglič, Yevhen Zelinskyi, Boštjan Likar, Franjo Pernuš, Miran Bürmen: OpenCL framework for fast estimation of optical properties from spatial frequency domain images. SPIE BiOS 2019: High-Speed Biomedical Imaging and Spectroscopy IV, K.K. Tsia, K. Goda (Eds.), Feb 2-7, San Francisco, CA, USA, Proc. of SPIE 10889:1088919, 2019 [COBISS-ID:12396372 ] [doi:10.1117/12.2509986 ]
2.
Peter Naglič, Yevhen Zelinskyi, Boštjan Likar, Franjo Pernuš, Miran Bürmen: From Monte Carlo simulations to efficient estimation of optical properties for spatial frequency domain imaging. SPIE BiOS 2019: Molecular-Guided Surgery: Molecules, Devices, and Applications V, B.W. Pogue, S. Gioux (Eds.), Feb 2-7, San Francisco, CA, USA, Proc. of SPIE 10862:1086209, 2019 [COBISS-ID:12396884 ] [doi:10.1117/12.2510195 ]
3.
Yevhen Zelinskyi, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Fast and accurate Monte Carlo simulations of subdiffusive spatially resolved reflectance for a complex probe-sample interface. SPIE BiOS 2019: Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XIX, I. Gannot (Ed.), Feb 2-7, San Francisco, CA, USA, Proc. of SPIE 10872:108720R, 2019 [COBISS-ID:12393300 ] [doi:10.1117/12.2510046 ]
4.
Matic Ivančič, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Efficient estimation of subdiffusive optical parameters in real time from spatially resolved reflectance by artificial neural networks. Optics letters, 43(12):2901-2904, 2018 [COBISS-ID:12098132 ] [doi:10.1364/OL.43.002901 ]
5.
Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Adopting higher-order similarity relations for improved estimation of optical properties from subdiffusive reflectance. Optics letters, 42(7):1357-1360, 2017 [COBISS-ID:11717716 ] [doi:10.1364/OL.42.001357 ]
6.
Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Estimation of optical properties from subdiffusive reflectance beyond the second similarity parameter γ. European Conferences on Biomedical Optics 2017: Diffuse Optical Spectroscopy and Imaging VI, H. Dehghani, H. Wabnitz (Eds.), Jun 25-27, Munich, Germany, Proc of. SPIE 10412:1041205, 2017 [COBISS-ID:11894100 ] [doi:10.1117/12.2286344 ]
7.
Matic Ivančič, Peter Naglič, Boštjan Likar, Franjo Pernuš, Miran Bürmen: The role of numerical aperture in efficient estimation of spatially resolved reflectance by a Monte Carlo light propagation model. SPIE BiOS 2017: Optical Interactions with Tissue and Cells XXVIII, E.D. Jansen, H.T. Beier (Eds.), Jan 30-31, San Francisco, CA, USA, Proc. of SPIE 10062:100621B, 2017 [COBISS-ID:11890772 ] [doi:10.1117/12.2252541 ]
8.
Matic Ivančič, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Virtually increased acceptance angle for efficient estimation of spatially resolved reflectance in the subdiffusive regime: a Monte Carlo study. Biomedical Optics Express, 8(11):4872-4886, 2017 [COBISS-ID:11890004 ] [doi:10.1364/BOE.8.004872 ]
9.
Jurij Jemec, Franjo Pernuš, Boštjan Likar, Miran Bürmen: 2D sub-pixel point spread function measurement using a virtual point-like source. International Journal of Computer Vision, 121(3):391-402, 2017 [COBISS-ID:11485524 ] [doi:10.1007/s11263-016-0948-8 ]
10.
Jurij Jemec, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Direct three-dimensional point spread function measurement for spectral-spatial interdependence error assessment of imaging spectrometers. Hyperspectral Imaging and Sounding of the Environment 2016, Nov 14-17, Leipzig, Germany, Proc. of OSA, HM2E.4, 2016 [COBISS-ID:11615060 ] [doi:10.1364/HISE.2016.HM2E.4 ]
11.
Jurij Jemec, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Deconvolution-based restoration of SWIR pushbroom imaging spectrometer images. Optics Express, 24(21):24704-24718, 2016 [COBISS-ID:11575124 ] [doi:10.1364/OE.24.024704 ]
12.
Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Estimation of optical properties by spatially resolved reflectance spectroscopy in the subdiffusive regime. Journal of Biomedical Optics, 21(9):095003, 2016 [COBISS-ID:11558228 ] [doi:10.1117/1.JBO.21.9.095003 ]
13.
Jurij Jemec, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Along-track calibration of SWIR push-broom hyperspectral imaging system. SPIE Commercial + Scientific Sensing and Imaging 2016: Hyperspectral Imaging Sensors: Innovative Applications and Sensor Standards 2016, D.P. Bannon (Ed.), Apr 17-21, Baltimore, MD, USA, Proc. of SPIE, 9860:98600H, 2016 [COBISS-ID:11360596 ] [doi:10.1117/12.2223800 ]
14.
Matic Ivančič, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Extraction of optical properties from hyperspectral images by Monte Carlo light propagation model. SPIE BiOS 2016: Optical Interactions with Tissue and Cells XXVII, E.D.Jansen (Ed.), Feb 13-18, San Francisco, CA, USA, Proc. of. SPIE 9706:97061A, 2016 [COBISS-ID:11312980 ] [doi:10.1117/12.2212807 ]
15.
Peter Naglič, Blaž Cugmas, Franjo Pernuš, Boštjan Likar, Miran Bürmen: Extraction of optical properties in the sub-diffuse regime by spatially resolved reflectance spectroscopy. SPIE BiOS 2016: Optical Interactions with Tissue and Cells XXVII, E.D.Jansen (Ed.), Feb 13-18, San Francisco, CA, USA, Proc. of. SPIE 9706:97061C, 2016 [COBISS-ID:11312724 ] [doi:10.1117/12.2212947 ]